Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M17
         (1260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
            hyperpolarization-activated ion channelvariant L protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 1039 HLYQGIIDDXEVVLLXLSESXR 974
            H YQG   D E++L  LSE  R
Sbjct: 418  HRYQGKFFDEELILGELSEKLR 439


>AY280848-1|AAQ16312.1|  632|Apis mellifera
            hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 1039 HLYQGIIDDXEVVLLXLSESXR 974
            H YQG   D E++L  LSE  R
Sbjct: 386  HRYQGKFFDEELILGELSEKLR 407


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 746 RLHGRL-VRHGRPRSE--RLGQEHRGQQLQFDPDPEDFGQ 856
           +L+ RL V  G+P     +L +E     L F+ DPE FG+
Sbjct: 86  KLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGR 125


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +3

Query: 822 FNSTQIQKILDKGKVKPAVNQVECHPYLTXQRLPSSARK 938
           FN  ++  ++DK     ++  +E    +T + L +SA++
Sbjct: 35  FNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKR 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,694
Number of Sequences: 438
Number of extensions: 6278
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)