Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M16
         (1296 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    40   0.19 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    39   0.33 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    34   7.0  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 39.5 bits (88), Expect = 0.19
 Identities = 31/92 (33%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
 Frame = +2

Query: 719 IXSXPLTSIXXXXAQVPGGXXXXXYXXXXGXXPXXASXAXXFXPXXXXXTCPXSXLXEXX 898
           I S PLTSI    AQV GG     Y           S A  F P     TCP   L E  
Sbjct: 18  IGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAW 77

Query: 899 XXLXXXPXGXXXR-XSXPPXXAXXXXPPXXXT 991
             L     G   R  S  P  A    PP   T
Sbjct: 78  RFLIAHAVGISVRCRSFAPSWAVCTNPPFSPT 109


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 38.7 bits (86), Expect = 0.33
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 576 RLRXAVSXHSKAVIRLSTXSGD 641
           RLR AVS HSKAVIRLST SGD
Sbjct: 32  RLRRAVSAHSKAVIRLSTESGD 53


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 34.3 bits (75), Expect = 7.0
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 473 VXSALIXXPTRRXRRFXYXAXFRXLAH 553
           V +AL+  PTR  RRF Y A FR LAH
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFLAH 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,433,777
Number of Sequences: 1657284
Number of extensions: 5768970
Number of successful extensions: 7179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7179
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 132819256952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)