Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M15
         (1273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   7.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 1001 PXXPXXGGFFXXXXXPPPPPPXXXKK 924
            P  P   GF      PPPPPP   KK
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 1000 PXXPXXGXFXXXXXPPPPPPXXXXKK 923
            P  P    F     PPPPPP    KK
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 386 FMSIILSVP*QTNCKILDSLLVCVLPKLIIYG 481
           F  ++   P Q N K L SLL  +LP +  YG
Sbjct: 541 FRVLLTGTPLQNNLKELISLLAFILPHVFDYG 572


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 120  WFVWASNIWKSPP 158
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,066
Number of Sequences: 5004
Number of extensions: 53125
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)