Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M13
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   2.4  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    28   3.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    28   3.2  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   4.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   7.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   7.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   7.4  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 171 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 317
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 624 VPPSVLL-VLVNEHLLKDNLALDFVLEVFAIIKQERGVTSLVTALKKGQLEGRLL 785
           VPP+VL     +   L  N + D +++ F I  QE+ V  L       + +GR+L
Sbjct: 131 VPPNVLYRQFADLRQLPPNQSYDTIIQTFCICSQEKAVEQLNNYRSLLRSDGRIL 185


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 515 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 339
           F  +  PTH F +YL   S     LI    + V +   + H + + R   +  S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205

Query: 338 DFAIASVV 315
              I  ++
Sbjct: 206 GLFILDLI 213


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 699 PARSPAPGCPSADVRSPGPA 640
           PA  PAPG P  + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 725 LLLDDREHFQHEVQRQV-VLQQMFVHQDQQH 636
           LLLDDREH  H+ +  +  LQ     Q   H
Sbjct: 581 LLLDDREHLSHDERSYIQQLQSQIKSQSVHH 611


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 711 SRTLPARSPAPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*CAVRDRSLSS 550
           S T+P  SPA G P+    +P P A   A   Y ST    S  P+  ++R  SL++
Sbjct: 300 SATVPI-SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 633 SVLLVLVNEHL-LKDNLALDFVLEVFAIIKQERGVTSLVTALKKGQLEGRLLEFLPLNRR 809
           S+++ L+N+H+ +        VLE   +I ++ G+T         QL+   L+ +P+++ 
Sbjct: 173 SIIIKLINQHIDIHIVPGRPTVLENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMDKE 232

Query: 810 SEE 818
            E+
Sbjct: 233 MEK 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,953,163
Number of Sequences: 5004
Number of extensions: 77775
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)