Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_M13
(1286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 144 1e-34
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 35 0.12
05_01_0064 + 454786-455646,456537-456752 31 1.5
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.5
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 31 2.6
03_05_0871 + 28396964-28399843 31 2.6
03_05_0600 + 26021863-26022469,26022562-26022992 30 3.4
08_02_0170 - 13702628-13703028,13703567-13703591 30 4.5
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 30 4.5
04_01_0305 - 4141692-4142912 30 4.5
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 4.5
01_07_0339 + 42848065-42848943,42849308-42849526 30 4.5
01_06_1226 - 35518981-35519295,35519876-35520745 30 4.5
12_02_0423 + 18944555-18945226,18945309-18945545 29 6.0
11_06_0291 + 22008412-22012284 29 7.9
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 29 7.9
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 144 bits (349), Expect = 1e-34
Identities = 92/286 (32%), Positives = 143/286 (50%), Gaps = 3/286 (1%)
Frame = +3
Query: 111 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 290
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKS 115
Query: 291 LDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFE 470
++S S L++ RYG+ F+V+ GG PG ++ + E + + + +
Sbjct: 116 IES--SDLNFSRYGDTFFEVVFIGGRTQPG-TIKPEEEGERHPYSVLDCAAQREAILPSV 172
Query: 471 QVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIG---NGCVPPSVL 641
K +RR +L K E M+K L L+ F+ +R KLA TAL +G P +V
Sbjct: 173 LYIQKTLRRRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVF 232
Query: 642 LVLVNEHLLKDNLALDFVLEVFAIIKQERGVTSLVTALKKGQLEGRLLEFLPLNRRSEEA 821
L+ ++L+ + L F+ E F +E + L+ LKKG++E LLEF P +R+ EA
Sbjct: 233 QPLLKDNLVSKGIVLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEA 292
Query: 822 LGAAFSSRGLAELLRLHRAQASQEARRELTASLLEQLAEXKVIRDV 959
L F+ GL L+ + + + +E+ +L + E I +V
Sbjct: 293 LSEHFTKEGLTSLVEYNEKKMFEVKLKEIKLTLTTMINEEAEISEV 338
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 35.1 bits (77), Expect = 0.12
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 731 AALLLDDREHFQHEVQRQVVLQQMFVHQDQQHGWRHASVT 612
A+ +D+ H H Q+Q QQ HQ QQHG SVT
Sbjct: 28 ASSTMDEHHHVHHHQQQQQQQQQQQHHQQQQHGLFFPSVT 67
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +3
Query: 366 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 545
L L GG+ G S + + + ED+ + ++F K + +Y+ FEE++++
Sbjct: 14 LCLCGGAACAAGRSGGEFSIVGYSEEDLASHDRLIELFEKWVAKYRKAYASFEEKVRRFE 73
Query: 546 VYLKGFDPEQRIKLARMTALWIG 614
V+ + I ++T+ W+G
Sbjct: 74 VFKDNLNHIDDIN-KKVTSYWLG 95
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -3
Query: 699 PARSPAPGCPSADVRSPGPAARMEARIRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFP 526
PA PAP P +P PAA+ E R R + Q PA + P P + P
Sbjct: 211 PAPVPAPAPPPPPAAAPAPAAQPEQRDRDAALDQFATPAPAPAPPPVTAPPPPPVAAP 268
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 620 MRASIRAAGPGERTSAEGQPGAGLRAG 700
+R ++R AG G+ GQPG G RAG
Sbjct: 123 LRGALRHAGSGKELGLWGQPGRGKRAG 149
>03_05_0871 + 28396964-28399843
Length = 959
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 531 MKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 629
MK +YL F E I ++++ LWIG+ +P
Sbjct: 437 MKLCFMYLGAFKEETEISVSKLIKLWIGDDFIP 469
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 3.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 400 PSIDTEPPGSSRPPA 356
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>08_02_0170 - 13702628-13703028,13703567-13703591
Length = 141
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/93 (21%), Positives = 41/93 (44%)
Frame = -1
Query: 836 ESSAQSLLAAAIKREELQQSAFKLSLLERRDERGDAALLLDDREHFQHEVQRQVVLQQMF 657
E++A+ A + + A +L L E +R DA+L+ + E +HE + Q+
Sbjct: 26 EAAAEHTQTTAAAEAAVARRAEELRLQEETWQRRDASLVEREAEVARHEAAACRLGDQLT 85
Query: 656 VHQDQQHGWRHASVTDPQCSHARQLDALFGIEA 558
++ GW + + + A + + +EA
Sbjct: 86 KREEAVTGWESRHLENARAERATMAERVSELEA 118
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 462 NFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNGCVP 629
N+E K + + Y + +K L+YL F + +I + +WI G VP
Sbjct: 676 NYEMANTKRILSFSYYD--LPSHLKNCLLYLSMFPEDYKIDKNHLIWIWIAEGFVP 729
>04_01_0305 - 4141692-4142912
Length = 406
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -1
Query: 905 FTASLLRRLCPM*SQQLGKSARRESSAQSLLAAAIKREELQQSAFKLSLLERRDERGDAA 726
+ S +RRL + +L RR + S L ++ E Q + L+++R++ A
Sbjct: 82 YLESRVRRLVNE-NTELSNEKRRAAYVSSTLEYRVRELEHQNTKLSAVLVKQREDTRKAG 140
Query: 725 LL-LDDREHFQHEVQRQV 675
LL ++ + +QH RQ+
Sbjct: 141 LLFMNAADTYQHVADRQI 158
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 171 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE 335
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 29.9 bits (64), Expect = 4.5
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 366 LLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVL 545
LLL G + P + + + ED+ + ++F K M +Y+ EE++++
Sbjct: 15 LLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYRKAYSSLEEKLRRFE 74
Query: 546 VY---LKGFDPEQRIKLARMTALWIG 614
V+ L D E + ++T W+G
Sbjct: 75 VFKDNLNHIDEENK----KITGYWLG 96
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 492 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 361
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 29.5 bits (63), Expect = 6.0
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -1
Query: 866 SQQLGKSARRESSAQSLLAAAIKREELQQSAFKLSLLERRDERGDAALLLDDREHFQHEV 687
S+ + +AR S+A+ L AAA LQ L+L+ E A+ + REH Q +
Sbjct: 183 SRLIPGAARMNSTAEMLQAAARHVRLLQAQVGMLALIHSSGEAKAASSMAASREHHQMMM 242
Query: 686 QRQVV 672
R ++
Sbjct: 243 MRALL 247
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 450 DTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARMTALWIGNG 620
D+ ++F+ + K M Y Y + +E K L+YL F Q+I+ + + W+ G
Sbjct: 794 DSQKSFDAI-AKNMLMYSYND--LPKEYKSCLLYLAIFPKGQKIRRSTLIGRWVTEG 847
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 29.1 bits (62), Expect = 7.9
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 198 EKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGE-VIFD 347
EK+K DP GF D V A G ++ + S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,819,247
Number of Sequences: 37544
Number of extensions: 652899
Number of successful extensions: 2549
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4004040288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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