Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M11
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.3  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   3.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 1271 PPGGGXPPPXXXXXPXXXXXXPPPPPXXXK 1182
            PPG   PPP            PPPPP   K
Sbjct: 5    PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
 Frame = -3

Query: 1273 PPP----GGGXPPPXXRXXPGXXXXXPPPPP 1193
            PPP    GG  PPP      G     PPPPP
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 621 PXXGGGXPXPPXFFXXXGXPXPPXXGXPPPPP 526
           P  GG  P PP        P PP    PPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
 Frame = -1

Query: 1008 KXPPXPPXXXGXPXXXPXXXKXXXXXPPXXGGXXXXPP---GGXXPPPP 871
            K PP PP     P   P         P   G     PP    G  PPPP
Sbjct: 730  KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = -3

Query: 595 PPXXFXXXGXPXPPPX----GXXPPPPP 524
           PP      G P PPP     G  PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 612 GGGXPXPPXFFXXXGXPXPPXXGXPPPP 529
           G   P PP  F   G P PP  G P  P
Sbjct: 488 GTSAPLPPTTFAPPGVPLPPIPGAPGMP 515


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 1273 PPPGGGXPPPXXRXXPGXXXXXPPPP 1196
            PPP    PPP     P      PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 131 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 277
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 249 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 79
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,829
Number of Sequences: 5004
Number of extensions: 61679
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)