Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_M10
(1310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 458 e-130
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 458 e-130
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 458 e-130
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 218 1e-57
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 210 4e-55
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 116 7e-27
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 57 6e-09
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 47 7e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 9e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 43 8e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 43 8e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 2e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.002
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 32 0.15
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.35
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.81
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 1.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.3
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 27 4.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 5.7
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 7.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 458 bits (1130), Expect = e-130
Identities = 215/289 (74%), Positives = 242/289 (83%)
Frame = +1
Query: 100 MGKEKTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 279
MGKEK HIN+VVIGHVDSGKSTTTGH IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 280 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 459
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 460 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 639
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 640 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPGR 819
+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 820 PTDKPCVFPCKTYTKSVVLVPCPVGRVETGVLKXGTMVVFXPXNITTEV 966
PTDKP P + K + PVGRVETGV+K G +V F P +TTEV
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEV 287
Score = 56.4 bits (130), Expect = 8e-09
Identities = 34/73 (46%), Positives = 39/73 (53%)
Frame = +3
Query: 819 PH*QALRLPLQDVYKIGGIGTVPGRQS*NWCVETRYHGXLXPRQHHY*SXSVEMXHEXLX 998
P + LRLPLQDVYKIGGIGTVP + ++ P SVEM HE L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 999 KAVPGXNVGXXVK 1037
+PG NVG VK
Sbjct: 299 AGLPGDNVGFNVK 311
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 458 bits (1129), Expect = e-130
Identities = 214/289 (74%), Positives = 242/289 (83%)
Frame = +1
Query: 100 MGKEKTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 279
MGKEK HIN+VVIGHVDSGKSTTTGH IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 280 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 459
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 460 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 639
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 640 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPGR 819
+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 820 PTDKPCVFPCKTYTKSVVLVPCPVGRVETGVLKXGTMVVFXPXNITTEV 966
PTDKP P + K + PVGRVETGV+K G +V F P +TTEV
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEV 287
Score = 56.4 bits (130), Expect = 8e-09
Identities = 34/73 (46%), Positives = 39/73 (53%)
Frame = +3
Query: 819 PH*QALRLPLQDVYKIGGIGTVPGRQS*NWCVETRYHGXLXPRQHHY*SXSVEMXHEXLX 998
P + LRLPLQDVYKIGGIGTVP + ++ P SVEM HE L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 999 KAVPGXNVGXXVK 1037
+PG NVG VK
Sbjct: 299 AGLPGDNVGFNVK 311
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 458 bits (1129), Expect = e-130
Identities = 214/289 (74%), Positives = 242/289 (83%)
Frame = +1
Query: 100 MGKEKTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 279
MGKEK HIN+VVIGHVDSGKSTTTGH IYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 280 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 459
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 460 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 639
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 640 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPGR 819
+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PP R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 820 PTDKPCVFPCKTYTKSVVLVPCPVGRVETGVLKXGTMVVFXPXNITTEV 966
PTDKP P + K + PVGRVETGV+K G +V F P +TTEV
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEV 287
Score = 56.4 bits (130), Expect = 8e-09
Identities = 34/73 (46%), Positives = 39/73 (53%)
Frame = +3
Query: 819 PH*QALRLPLQDVYKIGGIGTVPGRQS*NWCVETRYHGXLXPRQHHY*SXSVEMXHEXLX 998
P + LRLPLQDVYKIGGIGTVP + ++ P SVEM HE L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 999 KAVPGXNVGXXVK 1037
+PG NVG VK
Sbjct: 299 AGLPGDNVGFNVK 311
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 218 bits (533), Expect = 1e-57
Identities = 114/289 (39%), Positives = 175/289 (60%), Gaps = 4/289 (1%)
Frame = +1
Query: 112 KTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 291
K H+NIV IGHVD+GKST G+ ++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 292 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 471
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 472 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GY 648
AG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GY
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 415
Query: 649 NPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPGR 819
N V ++P+S + G N+ + S+ PW++ G L+E LD++ R
Sbjct: 416 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------GPSLLEYLDSMTHLER 463
Query: 820 PTDKPCVFPCKTYTKSVVLVPCPVGRVETGVLKXGTMVVFXPXNITTEV 966
+ P + P + K + + G++E G +K + V+ P N T EV
Sbjct: 464 KVNAPFIMPIASKYKDLGTI--LEGKIEAGSIKKNSNVLVMPINQTLEV 510
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 210 bits (512), Expect = 4e-55
Identities = 118/269 (43%), Positives = 157/269 (58%), Gaps = 3/269 (1%)
Frame = +1
Query: 112 KTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 291
K +++VV GHVDSGKST G +++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 292 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 471
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 472 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGY 648
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGF 352
Query: 649 NPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPGRP 822
+ V FVPIS G N++ + S W+K G L+ ALD ++PP +P
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKP 400
Query: 823 TDKPCVFPCKTYTKSVVLVPCPVGRVETG 909
KP +S V GRVE G
Sbjct: 401 YRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 116 bits (279), Expect = 7e-27
Identities = 94/278 (33%), Positives = 136/278 (48%), Gaps = 2/278 (0%)
Frame = +1
Query: 106 KEKTHINIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 285
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTAA-ITKC--------------LSDLGQASFMDYSQIDK 93
Query: 286 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 465
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 466 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 645
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY----- 201
Query: 646 YNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA-ILPPGR 819
G+ GDN + + + +G + E G L+EA+D+ I P R
Sbjct: 202 ------------GFDGDNTPIVSGSALCALEGREPE--IGLNSITKLMEAVDSYITLPER 247
Query: 820 PTDKPCVFPCKTYTKSVVLVPCPVGRVETGVLKXGTMV 933
TD P + + GRVE G LK G +
Sbjct: 248 KTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEI 285
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.8 bits (131), Expect = 6e-09
Identities = 48/148 (32%), Positives = 69/148 (46%)
Frame = +1
Query: 124 NIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 303
N+ +I H+D+GK+T T +Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 304 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 483
RGITI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 484 KNGQTREHALLAFTLGVKQLIVGVNKMD 567
QT+ A G+ ++I VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.8 bits (106), Expect = 7e-06
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +1
Query: 124 NIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 303
NI + H+DSGK+T T +Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 304 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 426
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 427 DCAVLIVAAGTGEFEAGISKNGQTREH 507
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 46.4 bits (105), Expect = 9e-06
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 124 NIVVIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 303
N VI H+D GKST + I K G+ + + +F+ + LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSD-CILKLTGV--------------INEHNFRNQF-LDKLEVERR 103
Query: 304 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 462
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 8e-05
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 100 MGKEKTHINIVVIGHVDSGKSTTTGHWIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 270
MGK N+ VI HVD GKST T + K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 271 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 447
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 43.2 bits (97), Expect = 8e-05
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +1
Query: 100 MGKEKTHINIVVIGHVDSGKSTTTGHWIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 270
MGK N+ VI HVD GKST T + K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 271 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 447
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +1
Query: 355 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 534
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 535 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 633
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect(2) = 0.002
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 247 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 420
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 421 QADCAVLIVAAGTG 462
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.002
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 127 IVVIGHVDSGKST 165
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.3 bits (70), Expect = 0.15
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 133 VIGHVDSGKSTTTGHWIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 306
++GHVD+GK+ + + + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDN-------LRRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 307 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 447
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.35
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +1
Query: 124 NIVVIGHVDSGKSTTTGHWIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 294
N ++ HVD GK+T + G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 295 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 462
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.81
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 280 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 402
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 317 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 189
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 295 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 447
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 821 GRPGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 684
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 584 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 754
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 755 RKA 763
++
Sbjct: 205 SQS 207
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 341 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 210
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,418,164
Number of Sequences: 5004
Number of extensions: 90970
Number of successful extensions: 302
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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