Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M09
         (1325 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   2.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   2.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   5.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   5.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   6.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   6.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 484 DGHLLTRTFLVTERITLADVIVFSTLL 564
           DGH++  TF  +E   + DV++ + L+
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLI 650


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 484 DGHLLTRTFLVTERITLADVIVFSTLL 564
           DGH++  TF  +E   + DV++ + L+
Sbjct: 624 DGHVILETFHFSEADFVMDVVMLAVLI 650


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 239 SNAGTFPAGNFFKXSSDL 186
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 239 SNAGTFPAGNFFKXSSDL 186
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 239 SNAGTFPAGNFFKXSSDL 186
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 716 FLGSYVGGAAQSVSEPTTADTCGWWATV 633
           F+ S  GG   S+ +  T   CG W  +
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVWKRI 235


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 142 TDVKVAPNFVFGEXNKSED 198
           ++  ++P+ VFG+  KSED
Sbjct: 201 SEQSLSPDTVFGDDGKSED 219


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,449
Number of Sequences: 336
Number of extensions: 4772
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 39254702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)