Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M09
         (1325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    76   1e-14
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    56   1e-08
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    32   0.15 
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   2.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   3.3  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   5.8  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
 Frame = +1

Query: 184 NKSEDXLKKFPAGKVPAFESADGKVLLTESNAIAYYXAN----ESLRGGDLATQARVWQW 351
           N   D   KFP  K+P F   DG   L+E+ AIA+Y A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 352 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 531
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 532 LADVIVFSTLLHAXQHVLHPSVRXSLINVQRWFLTVAHQPQVSAVVGSLTLCAAP 696
           LAD+     L     +VL  S      ++ R++ T+ HQ ++ A+   L     P
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQP 211


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
 Frame = +1

Query: 190 SEDXLKKFPAGKVPAFESADGKVLLTESNAIAYYXAN------ESLRGGDLATQARVWQW 351
           S D   KFP  K+P F  ADG  L      + Y+         E L   +   +A + +W
Sbjct: 40  SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99

Query: 352 ASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 525
             + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  RT+LV +R
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDR 159

Query: 526 ITLADVIVFSTLLHAXQHVLHPSVRXSLINVQRWFLTVAHQPQV 657
            TLAD+   S L      ++    R  L ++ R+++T+ HQ ++
Sbjct: 160 FTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 481 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAXQHVLHPSVRXSLINVQRWFLTVAHQPQV 657
           LD  L + TF+  +  I++AD+ V++ + H+    L       L NV RWF  + HQ  V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 658 SAVVGSLTL 684
                S+++
Sbjct: 187 MEAANSMSM 195


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 458 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 550
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 481 LDGHLLTRTFLVTERITLADVIVFSTLLHAXQHVLHPSV 597
           L  HLLT T +V +       I+ +  +H  + +LHP++
Sbjct: 47  LAAHLLTNTKVVLKSSCRKQAIILAREIHHHRRLLHPNI 85


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 320 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 415
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,067,219
Number of Sequences: 5004
Number of extensions: 73097
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)