Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_M07
         (1280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.64 
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297...    29   7.9  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 304 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 176
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>10_08_0105 -
           14828097-14828226,14828371-14828547,14829690-14829739,
           14829841-14829909,14829976-14830074,14830148-14830226,
           14830587-14830687,14830794-14830862,14831019-14831059,
           14831313-14831663,14831676-14832511,14832674-14832777,
           14833587-14834003,14836108-14836491
          Length = 968

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 250 RHRTELYPDLRSRDARVKKKTDSIDLRD-----PNGLRRRVSRFECETRLVKSHCLEPPD 86
           R  +++Y  ++     VK+  ++ D  D     P+  R  + RF  +T    S  + PP 
Sbjct: 608 RFDSQIYSSMQGYSPEVKENKENYDRHDNMRLHPDPRRSPLDRF-MDTSRQNSESVSPPQ 666

Query: 85  SRGSTVSISLPDSGRLEI 32
           +  STV + L +    EI
Sbjct: 667 AGSSTVDMVLGEVSECEI 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,123,442
Number of Sequences: 37544
Number of extensions: 595862
Number of successful extensions: 1506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)