Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L21
         (1283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.20 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.45 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   7.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 993  PPPPXXGXPPPXXXXPPPXXXXXPPPP 913
            PPPP    PPP    P P      PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 30.7 bits (66), Expect = 0.45
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 993  PPPPXXGXPPPXXXXPPPXXXXXPPPP 913
            PPPP    PPP     P      PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 993 PPPPXXGXPPPXXXXPPPXXXXXPPPP 913
           PP P  G PPP    P       PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 994 PPPPXXGXXPPPXXXXPPXXGXXPPXP 914
           PPP      PPP    P   G  PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -2

Query: 1024 PXXXXGGXFXPPPPXX--GXXPPPXXXXPP 941
            P    GG   PPPP    G  PPP    PP
Sbjct: 754  PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 993 PPPPXXGXPPPXXXXPPP 940
           PPPP  G  PP    PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 990 PPPXXGXPPPXXXXPPPXXXXXPPPP 913
           PP     PPP     PP     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 993 PPPPXXGXPPPXXXXPPPXXXXXPPP 916
           PPPP    PPP    PP      PPP
Sbjct: 9   PPPP----PPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 990 PPPXXGXPPPXXXXPPPXXXXXPPP 916
           PPP     PP     PP     PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPP 174


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 914 GGGGXXXXXGGGXXXXGGGXPXXGGG 991
           G GG     GGG    GGG    GGG
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,366
Number of Sequences: 5004
Number of extensions: 20091
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)