Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L18
(1375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.070
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.28
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.86
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 6.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.070
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +3
Query: 438 GGGXAGXXGXXGSGGXXGKG--XXXXGGXXXXXGXXXXGPRPXGGGGGXXXXXXGGXXXX 611
GG G G G GG G+G GG G GP GGG G GG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 612 XXXXGXXXXXPXXPG 656
G PG
Sbjct: 258 PGGFGGGPGGHGGPG 272
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 510 GGXXXXXGXXXXGPRPXGGGGGXXXXXXGGXXXXXXXXGXXXXXPXXPGXXXGXXXXXGG 689
GG G GP P GG G GG G PG G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGF----GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Query: 690 GXGG 701
G GG
Sbjct: 243 GPGG 246
Score = 27.1 bits (57), Expect = 6.1
Identities = 25/95 (26%), Positives = 27/95 (28%)
Frame = +2
Query: 344 KGGXGGDWGXXLGGXGXPXPPPWPPXXAPXPRGRGGXFXXXXXXXXXXXERXXXXGGXXR 523
+G GG +G GG G P P P G G F GG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPP-------GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG 235
Query: 524 XRGAXXXGXPAXXXGGXGXXXXXGGXXGXPXXXGG 628
G G G G GG G P GG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -1
Query: 595 PXXXXXXPPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPPP 437
P PP P P PP P P PP P P P+ PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP--PSAPPP 1733
Score = 30.7 bits (66), Expect = 0.49
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = -1
Query: 565 PPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPPP 437
PP P P PP P P PP P PA P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -1
Query: 598 PPXXXXXXPPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXK-PAXPPPG 434
PP PPPPP P PP P P PP P P+ P PG
Sbjct: 1699 PPQMSAPTPPPPPMS------VPPPPSAPPMPAGP-PSAPPPPLPASSAPSVPNPG 1747
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 389 PXPPKXXPNPPXXPPFXAXKP 327
P PP P PP PP A P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -2
Query: 699 PXXPPPXPXXXPXXXXGXXXXXXXPPXXXGXPXXPPXXXXXPXPPXXXAGXP 544
P PP P P PP G P PP P PP A P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -1
Query: 598 PPXXXXXXPPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPP 440
PP PP P G P P P PP P P PA PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP--PAAPAPPP 478
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -1
Query: 598 PPXXXXXXPPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPPPG 434
PP PPPPP P P P PP PA PP G
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP-PAPPPAIPGRSAPALPPLG 407
Score = 26.6 bits (56), Expect(2) = 1.7
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = -2
Query: 690 PPPXPXXXPXXXXGXXXXXXXPPXXXGXPXXPPXXXXXPXPPXXXAGXP 544
P P P P P G P PP P P AG P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 20.6 bits (41), Expect(2) = 1.7
Identities = 10/31 (32%), Positives = 11/31 (35%)
Frame = -2
Query: 450 PPLPRGXGAXXGGQGGGXGXPXPPKXXPQSP 358
PPLP G A P P P +P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -1
Query: 574 PPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPPP 437
PPPPP P PP P PP P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -1
Query: 574 PPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKPAXPPP 437
PPPPP P PP PP P A PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = -1
Query: 574 PPPPPXGRGPXXXXPXXXXXPPXXXXPFPXXPPDPXXPXKP-AXPPPG 434
P P P PP PFP P P P P A PPG
Sbjct: 512 PGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 4.6
Identities = 27/115 (23%), Positives = 29/115 (25%)
Frame = -2
Query: 690 PPPXPXXXPXXXXGXXXXXXXPPXXXGXPXXPPXXXXXPXPPXXXAGXPXXXAPRXRXXP 511
P P P P P P P P P A P P P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP---VPVPSGAP 1140
Query: 510 PXXXXLSXXXXXXXXXPXNXPPLPRGXGAXXGGQGGGXGXPXPPKXXPQSPPXPP 346
P P PP+P+ A G P PK PP PP
Sbjct: 1141 PVPKP--SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/88 (23%), Positives = 21/88 (23%)
Frame = -1
Query: 700 PPXPPPXXXXXPXXXPGXXGXXXXXPXXXXXXXXPPXXXXXXPPPPPXGRGPXXXXPXXX 521
PP P P P P P PP PP P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGA-----PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 520 XXPPXXXXPFPXXPPDPXXPXKPAXPPP 437
P P PP P P P P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/56 (28%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Frame = -1
Query: 598 PPXXXXXXPPPPPXGRGPXXXXPXXXXXPPXXXX--PFPXXPPDPXXPXKPAXPPP 437
PP PP P P PP P P P P P P PP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,341
Number of Sequences: 5004
Number of extensions: 24738
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 759101996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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