Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L16
(1325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 207 1e-53
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 206 2e-53
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 111 2e-24
11_04_0056 + 12942802-12942920,12943022-12943115 58 1e-08
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.018
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 32 1.2
04_03_0232 - 13049649-13052807 31 2.0
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 2.7
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 6.2
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 207 bits (506), Expect = 1e-53
Identities = 94/184 (51%), Positives = 128/184 (69%)
Frame = +1
Query: 52 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 231
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K +
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYL 60
Query: 232 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 411
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRT 120
Query: 412 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 591
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAYE++ K
Sbjct: 121 KRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-K 177
Query: 592 RITK 603
++T+
Sbjct: 178 QLTR 181
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 206 bits (504), Expect = 2e-53
Identities = 95/184 (51%), Positives = 129/184 (70%)
Frame = +1
Query: 52 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 231
+V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 232 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 411
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
Query: 412 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 591
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY+++ K
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR-K 177
Query: 592 RITK 603
++ K
Sbjct: 178 QLAK 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 111 bits (266), Expect = 2e-24
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +1
Query: 253 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 432
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 433 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 528
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 1e-08
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 346 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 513
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.9 bits (84), Expect = 0.018
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +1
Query: 88 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLM 231
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 232 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 405
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.9 bits (69), Expect = 1.2
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 128 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 307
Q+SP + +L WF N ++S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 308 GRL*EV 325
GRL E+
Sbjct: 624 GRLSEM 629
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 556 PCPSSCLQAYEQHHGISIQFHGTVCLH 476
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 494 MKLDGNTVMLFVSLKTRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 652
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 609 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 710
W +G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,269,021
Number of Sequences: 37544
Number of extensions: 511191
Number of successful extensions: 1236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4155355764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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