Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L15
(1292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 126 5e-30
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 106 6e-24
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 33 0.086
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.46
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 30 0.80
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 1.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 7.5
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 9.8
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 9.8
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 126 bits (305), Expect = 5e-30
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 2/222 (0%)
Frame = +1
Query: 340 NLPPVKYSLAKSEETITEVTTLSNGLRVASEKK-FGQFCTAGVVIDSGPRYEVAYPNGIC 516
NLP + A + TE TTL NGL VA+E + Q T V +D+G R E A NG
Sbjct: 6 NLPKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAA 65
Query: 517 HFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAE 696
HFLE L+F T + + + L E E G + SR+ TVY A + VLA+
Sbjct: 66 HFLEHLAFKGTKNRSQKALEL-EFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLAD 124
Query: 697 VTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQEN 876
+ +SA +E RQ + E E + ++ ++ D +H+ AY+G+ LG + P+EN
Sbjct: 125 ILTNSSISASAVERERQVILREQEEVDKMADE--VVFDHLHATAYQGHPLGRTILGPKEN 182
Query: 877 VNKXDKGIILNYLKNHYTPXRMVVXAVG-VDHEPLVESVQKY 999
+ + +L Y+K++Y RM++ + G + HE LV+ +KY
Sbjct: 183 IESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAEKY 224
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 106 bits (255), Expect = 6e-24
Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 2/221 (0%)
Frame = +1
Query: 346 PPVKYSLAKSEETITEVTT--LSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICH 519
P +K + + + EV T L NG+ + + G F GV + +G RYE +G+ H
Sbjct: 30 PALKSFYSTQDPALNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSH 89
Query: 520 FLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEV 699
F+++L+F AT + + M +LE GG C SR++ +Y + + +++++++LAE
Sbjct: 90 FMDRLAFQATERTPVGE-MKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAET 148
Query: 700 TLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENV 879
L P + D++ R ++ +E L +P + +L + H A++ NTLG +C + V
Sbjct: 149 VLAPKIQEDDLVHYRDSIIYENSELWTKP--DALLGEFAHVTAFQNNTLGNCLLCTPDKV 206
Query: 880 NKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPLVESVQKYL 1002
N I YLK Y P + + G+ E + + + K L
Sbjct: 207 NGITATSIREYLKYFYRPEHLTLAYAGIPQE-IAKEITKEL 246
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 33.1 bits (72), Expect = 0.086
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +1
Query: 508 GICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQV 687
G+ HF E L F T K+ + + LE H GI + + + T Y L
Sbjct: 65 GLAHFCEHLLFMGTKKYPDENEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDR 124
Query: 688 LAEVTLRPI 714
A+ + P+
Sbjct: 125 FAQFFIDPL 133
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.46
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Frame = +1
Query: 58 ILREIEKFRKTLIFKISNLKNTLTDYVFISPLFVFGSNMSHVTDVK----FLVTRLFSLK 225
+ +EK T +SNL + + ++P + N+S + +K L+T F
Sbjct: 3454 LFANVEKPGSTFTNMVSNLITDARELMKLTPETINDDNLSEIKHLKSRKHLLLTETFKTL 3513
Query: 226 NSFQAPKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEETITEVTTL 405
+F ++ ++ + + LS ++ + +P L++ V SL KS + I + TL
Sbjct: 3514 KAF-GLQYRVKAGIE--ENLSNLRNLLAVIPTFPVTSLSIEKVDRSLMKSLDFIPKFQTL 3570
Query: 406 S 408
+
Sbjct: 3571 A 3571
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 29.9 bits (64), Expect = 0.80
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 764 NSNATACLAASISSADNIGL-NVTSAKT*VTASNPLESALVAYTVVSREPWQSHIPP*RS 588
N+ + + A S+ S + + NVTS K ++A+ L + +S++P H P +
Sbjct: 153 NTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAP--ST 210
Query: 587 NSRSITSRVANLWVAPK 537
R + S + +L+ +P+
Sbjct: 211 RQRDLKSSILSLYASPR 227
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 1.4
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)
Frame = -1
Query: 836 PLYAAE*IISIRIVSCSGLIERVSNSNATACLAASISSADNIGLNVTSAKT*VTASNPLE 657
P ++AE I+S +S S + SIS+ + + + K V+ L
Sbjct: 171 PSFSAETILSSLSISTSNNAMSKTTPAPPLVTTKSISADQD---DFYTCKEEVSTYEGLN 227
Query: 656 SALVAYTVVSREPWQSHIPP*RSNSRSITSRVANLWVAPKLSFSRK*QIPLG*ATSYL-G 480
S + V SR+ + R+++ NL V PK+S + PL +++YL
Sbjct: 228 SQIELSPVKSRDSQNKSAKNLSTAYRTVSGESRNLMVDPKVSPYGNSRTPLRDSSNYLRD 287
Query: 479 PESITTPAVQNCPNFFSEATLKPL 408
SI + + P SE T K L
Sbjct: 288 RRSINRQSSLSIPKSTSETTRKTL 311
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 238 APKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEE 381
APKW I +F + G S G++ P + +L+L ++Y L K++E
Sbjct: 605 APKWRINEFDETG---SVYYGALPYNYPEDDVLLDLDGLQY-LVKNDE 648
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 862 CPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPLVESVQKYLVDINLLG 1023
C E +++ DK I NYL+ Y P + D L + V+K+ +L+G
Sbjct: 230 CLYELIDR-DKKSIYNYLRRKYNPFKKKCKWTIEDEAELKKLVEKHGTSWSLIG 282
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 88 TLIFKISNLKNTLTDYVFISPLFVFGSNMSHVTDVKFLVTRLFSLKNS 231
++ K LKN ++D SP+++ G H + ++L FS+ S
Sbjct: 274 SITIKCKILKNGISDLAMKSPMYLPGPVEPHFSPSRYLTFEGFSVDES 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,529,357
Number of Sequences: 5004
Number of extensions: 88004
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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