Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L15
(1292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondria... 161 7e-40
Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical pr... 124 1e-28
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 105 5e-23
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 48 1e-05
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 48 1e-05
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 40 0.005
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 33 0.44
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 33 0.44
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 33 0.44
U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly glu... 32 0.77
U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly glu... 32 0.77
U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly glu... 32 0.77
U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly glu... 32 0.77
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 32 0.77
>AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondrial
processing peptidasealpha protein 1 protein.
Length = 477
Score = 161 bits (392), Expect = 7e-40
Identities = 81/210 (38%), Positives = 125/210 (59%), Gaps = 1/210 (0%)
Frame = +1
Query: 388 TEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGATHKFATR 567
+ VT L NGL+V +E +G F T GV I+SG RYE +P GI +EKL++ ++ F++R
Sbjct: 19 SRVTRLPNGLKVCTEDTYGDFVTVGVAIESGCRYENGFPFGISRIVEKLAYNSSESFSSR 78
Query: 568 DVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSADEIEAARQ 747
D + +LE + GI DCQ +RDT +YA S G+++V VL++ +PI +E A+
Sbjct: 79 DEVFAKLEENSGIVDCQSTRDTMMYAASCHRDGVDSVIHVLSDTIWKPIFDEQSLEQAKL 138
Query: 748 AVAFELETLSMRPEQ-ETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIILNYLKNH 924
V++E + L R E E +L D IH AA++ NT+G PK +++K + +L
Sbjct: 139 TVSYENQDLPNRIEAIEILLTDWIHQAAFQNNTIGYPKF-GNNSMDKIRVSDVYGFLSRA 197
Query: 925 YTPXRMVVXAVGVDHEPLVESVQKYLVDIN 1014
+TP RMVV VGV H+ V + ++ D+N
Sbjct: 198 HTPQRMVVGGVGVGHDEFVSIISRHF-DLN 226
>Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical protein
ZC410.2 protein.
Length = 458
Score = 124 bits (300), Expect = 1e-28
Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 1/209 (0%)
Frame = +1
Query: 388 TEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGATHKFATR 567
T VTTL NG RVA+E G T GV ID+G RYE NG HFLE ++F T + TR
Sbjct: 30 TIVTTLPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNGTAHFLEHMAFKGTPR-RTR 88
Query: 568 DVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSADEIEAARQ 747
+ E+E G + SR++T Y + L+ +L+++ L L+ +IEA R
Sbjct: 89 MGLELEVENIGAHLNAYTSRESTTYYAKCFTEKLDQSVDILSDILLNSSLATKDIEAERG 148
Query: 748 AVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIILNYLKNHY 927
+ E+E ++ ++ ++ D++H+ +KGN L + P E + +K + Y+ HY
Sbjct: 149 VIIREMEEVAQNFQE--VVFDILHADVFKGNPLSYTILGPIELIQTINKNDLQGYINTHY 206
Query: 928 TPXRMVVXAV-GVDHEPLVESVQKYLVDI 1011
RMV+ A GV+H+ +V+ +KY ++
Sbjct: 207 RSGRMVLAAAGGVNHDAIVKMAEKYFGEL 235
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical protein
F56D2.1 protein.
Length = 471
Score = 105 bits (253), Expect = 5e-23
Identities = 71/221 (32%), Positives = 107/221 (48%)
Frame = +1
Query: 352 VKYSLAKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEK 531
VK LA + + EVTTL NG RV +E T GV I++G R+E NG+ HFLE+
Sbjct: 28 VKDVLASAPQA--EVTTLKNGFRVVTEDNGSATATVGVWIETGSRFENEKNNGVAHFLER 85
Query: 532 LSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRP 711
L T K A+ + EL G + RD T A ++ +E V +LA+V
Sbjct: 86 LIHKGTGKRASA-ALESELNAIGAKLNSFTERDQTAVFVQAGAQDVEKVVDILADVLRNS 144
Query: 712 ILSADEIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXD 891
L A I+ R + ELE + + +L DM+H+A ++G L L + E++
Sbjct: 145 KLEASTIDTERVNLLKELE--ASDDYHQLVLFDMLHAAGFQGTPLALSVLGTSESIPNIS 202
Query: 892 KGIILNYLKNHYTPXRMVVXAVGVDHEPLVESVQKYLVDIN 1014
+ + ++HY P RMV+ AVG + KY D++
Sbjct: 203 AQQLKEWQEDHYRPVRMVLSAVGGGVSNVSSLADKYFGDLS 243
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 48.4 bits (110), Expect = 1e-05
Identities = 46/207 (22%), Positives = 79/207 (38%)
Frame = +1
Query: 367 AKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGA 546
AKS + T L NGLRV+S + G + + +G RY+ A G+ H + S G
Sbjct: 32 AKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRN-SVGR 90
Query: 547 THKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSAD 726
++ ++GG +RD + V +L ++ D
Sbjct: 91 DAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQLGNNAFKPWD 150
Query: 727 EIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIIL 906
+ + + L+ TI + +H AA++ LGL +VN +
Sbjct: 151 VEDVKHDTLPADATYLT----GTTIAFEQLHQAAFRNGGLGLSNY----SVNNVSAKDLS 202
Query: 907 NYLKNHYTPXRMVVXAVGVDHEPLVES 987
+ K V+ V VDH+ LV++
Sbjct: 203 AFAKERLVAGEAVLVGVNVDHDTLVQA 229
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 48.4 bits (110), Expect = 1e-05
Identities = 46/207 (22%), Positives = 79/207 (38%)
Frame = +1
Query: 367 AKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGA 546
AKS + T L NGLRV+S + G + + +G RY+ A G+ H + S G
Sbjct: 18 AKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRN-SVGR 76
Query: 547 THKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSAD 726
++ ++GG +RD + V +L ++ D
Sbjct: 77 DAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQLGNNAFKPWD 136
Query: 727 EIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIIL 906
+ + + L+ TI + +H AA++ LGL +VN +
Sbjct: 137 VEDVKHDTLPADATYLT----GTTIAFEQLHQAAFRNGGLGLSNY----SVNNVSAKDLS 188
Query: 907 NYLKNHYTPXRMVVXAVGVDHEPLVES 987
+ K V+ V VDH+ LV++
Sbjct: 189 AFAKERLVAGEAVLVGVNVDHDTLVQA 215
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 48.4 bits (110), Expect = 1e-05
Identities = 46/207 (22%), Positives = 79/207 (38%)
Frame = +1
Query: 367 AKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGA 546
AKS + T L NGLRV+S + G + + +G RY+ A G+ H + S G
Sbjct: 32 AKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRN-SVGR 90
Query: 547 THKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSAD 726
++ ++GG +RD + V +L ++ D
Sbjct: 91 DAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQLGNNAFKPWD 150
Query: 727 EIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIIL 906
+ + + L+ TI + +H AA++ LGL +VN +
Sbjct: 151 VEDVKHDTLPADATYLT----GTTIAFEQLHQAAFRNGGLGLSNY----SVNNVSAKDLS 202
Query: 907 NYLKNHYTPXRMVVXAVGVDHEPLVES 987
+ K V+ V VDH+ LV++
Sbjct: 203 AFAKERLVAGEAVLVGVNVDHDTLVQA 229
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 48.4 bits (110), Expect = 1e-05
Identities = 46/207 (22%), Positives = 79/207 (38%)
Frame = +1
Query: 367 AKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGA 546
AKS + T L NGLRV+S + G + + +G RY+ A G+ H + S G
Sbjct: 18 AKSAGVQEKTTVLENGLRVSSVELNGATSSIVLAFRAGSRYQPANKQGLTHLIRN-SVGR 76
Query: 547 THKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSAD 726
++ ++GG +RD + V +L ++ D
Sbjct: 77 DAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRDQSAVVLSLLGQLGNNAFKPWD 136
Query: 727 EIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIIL 906
+ + + L+ TI + +H AA++ LGL +VN +
Sbjct: 137 VEDVKHDTLPADATYLT----GTTIAFEQLHQAAFRNGGLGLSNY----SVNNVSAKDLS 188
Query: 907 NYLKNHYTPXRMVVXAVGVDHEPLVES 987
+ K V+ V VDH+ LV++
Sbjct: 189 AFAKERLVAGEAVLVGVNVDHDTLVQA 215
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 48.0 bits (109), Expect = 1e-05
Identities = 43/205 (20%), Positives = 77/205 (37%)
Frame = +1
Query: 367 AKSEETITEVTTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGA 546
A + + + +V L NGL V + + +G RYE A G+ H +
Sbjct: 15 AATTKPVEKVAKLGNGLTVGTIDSHKPIAHLVLAFRAGSRYEKANQAGLSHTIRNFVGRD 74
Query: 547 THKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSAD 726
T ++ V+ L + GG+ SRD + + VL +V P
Sbjct: 75 TQEYFGNTVVWT-LSQTGGVLKSFTSRDLFGVSLTIPRESTSVGLSVLGQVAGNPGFKPW 133
Query: 727 EIEAARQAVAFELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIIL 906
E+E + + R + +++D IH AAY+ LG P + +
Sbjct: 134 EVEDVLPTMRADN---GYRTAYD-LVVDQIHKAAYRNGGLGNSIYAPCSKIGSICTSTLS 189
Query: 907 NYLKNHYTPXRMVVXAVGVDHEPLV 981
++ + H+ V+ A H+ L+
Sbjct: 190 SFAEQHFVTGNGVLFATNAVHDDLL 214
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 39.5 bits (88), Expect = 0.005
Identities = 37/190 (19%), Positives = 66/190 (34%)
Frame = +1
Query: 397 TTLSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICHFLEKLSFGATHKFATRDVM 576
T L+NGL+V S++ G + +G RYE G+ H + + ++
Sbjct: 24 TKLNNGLKVVSQENNGAISQLILAFRAGSRYEKVTQPGLVHHVRNFVGRDAQSYPGLQLV 83
Query: 577 LRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEVTLRPILSADEIEAARQAVA 756
G + +RD S +L V +P E+E +
Sbjct: 84 WSS-AASGANLNSFATRDIFGVQISVARDQAAYALSILGHVAAKPAFKPWELEDVTPTI- 141
Query: 757 FELETLSMRPEQETILMDMIHSAAYKGNTLGLPKICPQENVNKXDKGIILNYLKNHYTPX 936
L LS + + D IH AA++ ++L + V + + H+
Sbjct: 142 --LADLSQKTPYGIVFED-IHRAAFRNDSLSFSLYSSKGQVGAYKSQELAKFAAKHFVSG 198
Query: 937 RMVVXAVGVD 966
V+ + VD
Sbjct: 199 NAVLVGINVD 208
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 33.1 bits (72), Expect = 0.44
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +1
Query: 310 PLPPLSEAMLNLPPVKYSL-AKSEETITEVT--TLSNGLRV--ASEKKFGQFCTAGVVID 474
PLP ++EA N+ ++ L K + E L+NG+RV S+ + A + +
Sbjct: 56 PLPKMTEAGKNIVLKRHDLIVKGAQDAREYRGLELTNGIRVLLVSDPTTDK-SAAALDVK 114
Query: 475 SGPRYEVAYPNGICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVY 642
G + G+ HF E + F T K+ + + + L H G + S D T Y
Sbjct: 115 VGHLMDPWELPGLAHFCEHMLFLGTAKYPSENEYSKFLAAHAGSSNAYTSSDHTNY 170
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 33.1 bits (72), Expect = 0.44
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +1
Query: 310 PLPPLSEAMLNLPPVKYSL-AKSEETITEVT--TLSNGLRV--ASEKKFGQFCTAGVVID 474
PLP ++EA N+ ++ L K + E L+NG+RV S+ + A + +
Sbjct: 56 PLPKMTEAGKNIVLKRHDLIVKGAQDAREYRGLELTNGIRVLLVSDPTTDK-SAAALDVK 114
Query: 475 SGPRYEVAYPNGICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVY 642
G + G+ HF E + F T K+ + + + L H G + S D T Y
Sbjct: 115 VGHLMDPWELPGLAHFCEHMLFLGTAKYPSENEYSKFLAAHAGSSNAYTSSDHTNY 170
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 33.1 bits (72), Expect = 0.44
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +1
Query: 310 PLPPLSEAMLNLPPVKYSL-AKSEETITEVT--TLSNGLRV--ASEKKFGQFCTAGVVID 474
PLP ++EA N+ ++ L K + E L+NG+RV S+ + A + +
Sbjct: 56 PLPKMTEAGKNIVLKRHDLIVKGAQDAREYRGLELTNGIRVLLVSDPTTDK-SAAALDVK 114
Query: 475 SGPRYEVAYPNGICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVY 642
G + G+ HF E + F T K+ + + + L H G + S D T Y
Sbjct: 115 VGHLMDPWELPGLAHFCEHMLFLGTAKYPSENEYSKFLAAHAGSSNAYTSSDHTNY 170
>U39850-8|AAM45369.1| 558|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform d
protein.
Length = 558
Score = 32.3 bits (70), Expect = 0.77
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 661 RGLEAVTQVLAEVTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIH--SAAYK 834
R A+ Q ++ L D AAR+A FEL + + +++ H +A K
Sbjct: 138 RTFTAIRQTAIKLVFDTFLERDSPNAAREAQEFELSIAKQYTDGQKYRINIGHKVAALRK 197
Query: 835 GNTLGLPKICPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPL-VESVQKYLVDI 1011
NT G+ ++ +N DK I+ K++ T R VDH L +E + L+
Sbjct: 198 ENTSGILEV--NKNAVSHDK-ILAGGPKDNCTVAR--GRKTHVDHRQLSIEKLHPLLLQF 252
Query: 1012 NLLGIXMXTN 1041
L + TN
Sbjct: 253 KLTTSELETN 262
>U39850-7|AAM45370.1| 573|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform e
protein.
Length = 573
Score = 32.3 bits (70), Expect = 0.77
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 661 RGLEAVTQVLAEVTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIH--SAAYK 834
R A+ Q ++ L D AAR+A FEL + + +++ H +A K
Sbjct: 153 RTFTAIRQTAIKLVFDTFLERDSPNAAREAQEFELSIAKQYTDGQKYRINIGHKVAALRK 212
Query: 835 GNTLGLPKICPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPL-VESVQKYLVDI 1011
NT G+ ++ +N DK I+ K++ T R VDH L +E + L+
Sbjct: 213 ENTSGILEV--NKNAVSHDK-ILAGGPKDNCTVAR--GRKTHVDHRQLSIEKLHPLLLQF 267
Query: 1012 NLLGIXMXTN 1041
L + TN
Sbjct: 268 KLTTSELETN 277
>U39850-5|AAM45368.1| 670|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform c
protein.
Length = 670
Score = 32.3 bits (70), Expect = 0.77
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 661 RGLEAVTQVLAEVTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIH--SAAYK 834
R A+ Q ++ L D AAR+A FEL + + +++ H +A K
Sbjct: 250 RTFTAIRQTAIKLVFDTFLERDSPNAAREAQEFELSIAKQYTDGQKYRINIGHKVAALRK 309
Query: 835 GNTLGLPKICPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPL-VESVQKYLVDI 1011
NT G+ ++ +N DK I+ K++ T R VDH L +E + L+
Sbjct: 310 ENTSGILEV--NKNAVSHDK-ILAGGPKDNCTVAR--GRKTHVDHRQLSIEKLHPLLLQF 364
Query: 1012 NLLGIXMXTN 1041
L + TN
Sbjct: 365 KLTTSELETN 374
>U39850-4|ABB51184.1| 672|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform g
protein.
Length = 672
Score = 32.3 bits (70), Expect = 0.77
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 661 RGLEAVTQVLAEVTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIH--SAAYK 834
R A+ Q ++ L D AAR+A FEL + + +++ H +A K
Sbjct: 252 RTFTAIRQTAIKLVFDTFLERDSPNAAREAQEFELSIAKQYTDGQKYRINIGHKVAALRK 311
Query: 835 GNTLGLPKICPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPL-VESVQKYLVDI 1011
NT G+ ++ +N DK I+ K++ T R VDH L +E + L+
Sbjct: 312 ENTSGILEV--NKNAVSHDK-ILAGGPKDNCTVAR--GRKTHVDHRQLSIEKLHPLLLQF 366
Query: 1012 NLLGIXMXTN 1041
L + TN
Sbjct: 367 KLTTSELETN 376
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 32.3 bits (70), Expect = 0.77
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 661 RGLEAVTQVLAEVTLRPILSADEIEAARQAVAFELETLSMRPEQETILMDMIH--SAAYK 834
R A+ Q ++ L D AAR+A FEL + + +++ H +A K
Sbjct: 1227 RTFTAIRQTAIKLVFDTFLERDSPNAAREAQEFELSIAKQYTDGQKYRINIGHKVAALRK 1286
Query: 835 GNTLGLPKICPQENVNKXDKGIILNYLKNHYTPXRMVVXAVGVDHEPL-VESVQKYLVDI 1011
NT G+ ++ +N DK I+ K++ T R VDH L +E + L+
Sbjct: 1287 ENTSGILEV--NKNAVSHDK-ILAGGPKDNCTVAR--GRKTHVDHRQLSIEKLHPLLLQF 1341
Query: 1012 NLLGIXMXTN 1041
L + TN
Sbjct: 1342 KLTTSELETN 1351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,238,668
Number of Sequences: 27780
Number of extensions: 504849
Number of successful extensions: 1291
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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