Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L14
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...   174   2e-44
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   3.1  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   4.0  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   7.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   9.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   9.3  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score =  174 bits (423), Expect = 2e-44
 Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 7/245 (2%)
 Frame = +3

Query: 141 LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 308
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 309 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI- 485
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 486 -HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKP 659
            +D  ++   L  + ++D V  I++TD E ILG+GD G  G+ I V K  L T   G+ P
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQGVGGVLISVAKGHLMTLCAGLDP 189

Query: 660 HQCLPITIDVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRYGQNCLVXFE 839
           ++ LPI +DVGTN ++   +  Y+GLR+ RVRG  YD   D  ++A +R       + FE
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQYMGLRKDRVRGEQYDSFLDNVIKA-IREVFPEAFIHFE 248

Query: 840 DFGNA 854
           DFG A
Sbjct: 249 DFGLA 253


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 728 VQRVVQHRLG-VRTHVDSDGQTLMRLDASERGVEREFAHWD 609
           V  VV++  G V T V SDG   +RLD   RG+ + F H D
Sbjct: 488 VSGVVENVRGSVITMVSSDG---LRLDVPSRGLRKRFRHGD 525


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 710 HRLGVRTHVDSDGQTLMRLDASERGVE 630
           +RLGV+ H D+D  TLM  D + +G+E
Sbjct: 269 NRLGVQEHTDADALTLMSQD-NVKGLE 294


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 733 PMYSGSSSIDWVFVPTSIVMGRH*CGLMPPSAV*SASLPT 614
           P+     ++ +VFVP+   +GR  CG+  P  V SAS+ T
Sbjct: 67  PLLCEDKNVPYVFVPSKAALGRA-CGVSRP--VISASITT 103


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +1

Query: 469 ASSSRSTIRDMYTMFLRTGRRRTSVPLL*PTENVFWVWATWAHAGWASQWANSRSTPRSE 648
           +S++R  +  +  +F  TG    ++PL+  T    WV  +         W   R+ P   
Sbjct: 452 SSTTRLVVALVVILFELTGALNIALPLMLATLISKWVSDSIIETSIYDAWIQFRNIPYFP 511

Query: 649 ASSRISVCPSLSTWVRTPSR 708
           +S+ +     L+  VR+P +
Sbjct: 512 SSNSLKFSIPLNFPVRSPEQ 531


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 691 PTSIVMGRH*CGLMPPSAV*SASLPTGMP 605
           P S+ MG      +PPSA  +  LP GMP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 462 PRGLFITIHDKGHVYDVLKNWPETDVRA 545
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,531
Number of Sequences: 5004
Number of extensions: 76388
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)