BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L14
(1230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 301 9e-82
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 298 5e-81
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 296 2e-80
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 214 8e-60
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 220 2e-57
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 200 2e-51
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 167 1e-41
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 31 1.9
08_01_0017 + 132109-132924 31 2.5
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 30 4.3
08_01_0680 - 5958066-5960253,5960707-5961503 30 4.3
07_03_0999 - 23216665-23217419,23217626-23217956 30 4.3
06_03_0334 - 19660526-19661755 30 4.3
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 29 5.7
11_04_0444 + 17816207-17817436 29 7.5
05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673 29 9.9
03_06_0416 - 33780911-33781861 29 9.9
03_02_0637 - 10009580-10009903,10013314-10014153 29 9.9
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 29 9.9
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 301 bits (738), Expect = 9e-82
Identities = 138/236 (58%), Positives = 176/236 (74%)
Frame = +3
Query: 144 SGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 323
SG L+ P NKG+AF+ ER + GLLPP + +QE Q + ++ Y PL +YI
Sbjct: 30 SGYTLLRDPRHNKGLAFSEAERDAHYLRGLLPPSIVSQELQEKKLMHNLRNYTVPLQRYI 89
Query: 324 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHV 503
+M L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G +YRRP+GL+I++ DKG +
Sbjct: 90 AMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI 149
Query: 504 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITI 683
+VLKNWPE ++ IVVTDGERILGLGDLG GMGIPVGKL+LYTALGG++P CLPITI
Sbjct: 150 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITI 209
Query: 684 DVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRYGQNCLVXFEDFGN 851
DVGTN +S+L+D YIGL+QRR G +Y EL +EFM AV + YG+ LV FEDF N
Sbjct: 210 DVGTNNESLLNDEFYIGLKQRRATGEEYHELLEEFMTAVKQNYGEKVLVQFEDFAN 265
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 298 bits (732), Expect = 5e-81
Identities = 135/236 (57%), Positives = 179/236 (75%)
Frame = +3
Query: 144 SGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 323
SG L+ P NKG+AF+ +ER + GLLPP V +Q+ QV+ ++ +Y PL +Y+
Sbjct: 99 SGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQRYM 158
Query: 324 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHV 503
+M L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G ++R+P+GL++++ DKG V
Sbjct: 159 AMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKV 218
Query: 504 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITI 683
DVL+NWPE +++ IVVTDGERILGLGDLG GMGIPVGKL+LYTALGG++P CLPITI
Sbjct: 219 LDVLRNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITI 278
Query: 684 DVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRYGQNCLVXFEDFGN 851
DVGTN + +L+D YIGLRQRR G +Y EL +EFM AV + YG+ L+ FEDF N
Sbjct: 279 DVGTNNEQLLNDEFYIGLRQRRATGKEYHELMEEFMSAVKQIYGEKVLIQFEDFAN 334
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 296 bits (727), Expect = 2e-80
Identities = 134/236 (56%), Positives = 177/236 (75%)
Frame = +3
Query: 144 SGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 323
SG L+ P NKG++FT +ER + GLLPP V +QE Q + ++ +++ PL +Y+
Sbjct: 33 SGHSLLRDPRHNKGLSFTEKERDAHYLRGLLPPVVLSQELQEKRLLQNVRQFQVPLQRYM 92
Query: 324 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHV 503
LM L +RNE LFY+ + DNV E++P+VYTPTVG ACQK+G ++RRP+GL+I++ +KG +
Sbjct: 93 ALMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRI 152
Query: 504 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPITI 683
++L+NWPE ++ IVVTDGERILGLGDLG GMGIPVGKLALYTALGG++P CLPITI
Sbjct: 153 LELLRNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITI 212
Query: 684 DVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRYGQNCLVXFEDFGN 851
DVGTN + +L D YIGLRQ+R G +Y +L DEFM A+ + YGQ LV FEDF N
Sbjct: 213 DVGTNNEDLLKDEFYIGLRQKRATGQEYSDLLDEFMAAIKQNYGQKVLVQFEDFAN 268
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 857 AFRLLXKYRNKYXTFNDNIXGT 922
AF LL KYR FND+I GT
Sbjct: 271 AFTLLEKYRANNLVFNDDIQGT 292
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 214 bits (523), Expect(2) = 8e-60
Identities = 97/172 (56%), Positives = 129/172 (75%)
Frame = +3
Query: 144 SGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYI 323
SG + L+ P NKG+AF ER+ + GLLPP + +QE Q +I +Y+ PL KY+
Sbjct: 53 SGYNLLRDPRYNKGLAFNERERETHYLRGLLPPAIVSQELQERKIMHNIRQYQLPLQKYM 112
Query: 324 YLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHV 503
+M L + NE LFY+ + DNV E++P+VYTPTVG ACQK+G ++ RP+GL+I++ +KG +
Sbjct: 113 AMMDLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKI 172
Query: 504 YDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKP 659
+VLKNWPE ++ IVVTDGERILGLGDLG GMGIPVGKLALYTALGG++P
Sbjct: 173 LEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRP 224
Score = 35.5 bits (78), Expect(2) = 8e-60
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 762 DYDELXDEFMRAVVRRYGQNCLVXFEDFGN 851
+Y + EFM AV + YG+ L+ FEDF N
Sbjct: 227 EYADFLHEFMTAVKQNYGEKVLIQFEDFAN 256
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 220 bits (537), Expect = 2e-57
Identities = 111/232 (47%), Positives = 145/232 (62%), Gaps = 10/232 (4%)
Frame = +3
Query: 147 GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYEN------- 305
G D L P NK AF + ER LG+ GLLPPRV + E+Q + S E+
Sbjct: 46 GTDILHDPWFNKDTAFPMTERDRLGLRGLLPPRVMSFEQQYDRFINSFRSLEHNTRGEPD 105
Query: 306 ---PLNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLF 476
L K+ L L DRNE L+YR + DN+ + PI+YTPTVGL C+ + ++RRPRG++
Sbjct: 106 TIVALAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGMY 165
Query: 477 ITIHDKGHVYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIK 656
+ DKG + ++ NWP V IVVTDG RILGLGDLG G+GIP+GKL +Y A GI
Sbjct: 166 FSAKDKGEMMSMIYNWPAEKVDMIVVTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGIN 225
Query: 657 PHQCLPITIDVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRY 812
P + LPI +DVGTN +L+D LY+GLRQ R+ G +Y + DEFM AV R+
Sbjct: 226 PQKVLPIMLDVGTNNTKLLEDKLYLGLRQPRLEGEEYLSVVDEFMEAVHARW 277
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 200 bits (488), Expect = 2e-51
Identities = 112/263 (42%), Positives = 152/263 (57%), Gaps = 10/263 (3%)
Frame = +3
Query: 87 ERDRIGLWGSGDGQPTSGLSGLDHLKHPGLNKGMAFTIEERQL------LGIHGLLPPRV 248
ERDR+GL G S +D P L F E + + L + P
Sbjct: 64 ERDRLGLRGLLPPNVVSSQQQIDRFT-PTLKYQYKFHSEIQHIDAKGLALNYLNISPAIC 122
Query: 249 KTQEEQVELCKLSIDRYEN--PLNKYIYLMGLLDRNEHLFYR--FVADNVAEMMPIVYTP 416
++ + V K + D + PL K+ L L DRNE ++Y+ + DN+ E PIVYTP
Sbjct: 123 ESSQYCVNADKYARDGPSDTYPLAKWRILNRLHDRNETMYYKAEVLIDNIEEHAPIVYTP 182
Query: 417 TVGLACQKFGLVYRRPRGLFITIHDKGHVYDVLKNWPETDVRAIVVTDGERILGLGDLGA 596
TVGL CQ + ++RRPRG++ + D+G + ++ NWP V IVVTDG RILGLGDLG
Sbjct: 183 TVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGV 242
Query: 597 CGMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGLRQRRVRGPDYDEL 776
G+GI +GKL LY A GI P + LP+ IDVGTN + +L DPLY+GL++ R+ G +Y +
Sbjct: 243 HGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGLQEHRLEGEEYVAI 302
Query: 777 XDEFMRAVVRRYGQNCLVXFEDF 845
DEFM AV R+ N +V FEDF
Sbjct: 303 IDEFMEAVFARW-PNVIVQFEDF 324
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 147 GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVE 272
G D L P N+G F++ ER LG+ GLLPP V + ++Q++
Sbjct: 45 GSDILHDPWFNRGTGFSMTERDRLGLRGLLPPNVVSSQQQID 86
Score = 29.9 bits (64), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 845 RERXAFRLLXKYRNKYXTFNDNI 913
+ + AFRLL +YR Y FND++
Sbjct: 325 QSKWAFRLLQRYRKTYRMFNDDV 347
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 167 bits (407), Expect = 1e-41
Identities = 70/105 (66%), Positives = 91/105 (86%)
Frame = +3
Query: 342 DRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHVYDVLKN 521
+R+E LFY+ + DNV E++P+VYTPTVG ACQK+G +YRRP+GL+I++ DKG + +VLKN
Sbjct: 5 ERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEVLKN 64
Query: 522 WPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIK 656
WPE ++ IV+TDGERILGLGDLG GMGIPVGKL+LYTALGG++
Sbjct: 65 WPERSIQVIVITDGERILGLGDLGCQGMGIPVGKLSLYTALGGVR 109
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 184 PLLRPGCLRWSRPERPL--VGCPSPEPHNPIRSRSIS 80
PL PGC R R R L + PSP P + RS+S+S
Sbjct: 22 PLRSPGCRRRRRRGRVLSALSSPSPSPSSASRSQSVS 58
>08_01_0017 + 132109-132924
Length = 271
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3
Query: 319 YLLSGFSYLSIESLHSSTCSSC 254
YL +GFS+ S +S HSSTCS C
Sbjct: 84 YLSAGFSFASRDS-HSSTCSCC 104
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 29.9 bits (64), Expect = 4.3
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 220 PKS*RSSMVKAMPLLRPGCLRWSRPERPLVG-CPSPEPHNPIRS 92
P+S SS K +PL RP SRPE P S P P S
Sbjct: 217 PQSSHSSYSKILPLFRPKSNSRSRPESPAASDAASQTPFRPTES 260
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 66 KCTYXEMERDRIGLWGSGDGQPTSGLSGLDHLKHPGL 176
K Y E R+ IG WGSG G+ + HL + L
Sbjct: 380 KKEYWESIRNSIGTWGSGTNPTLEGMRQILHLSYKDL 416
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 618 PLGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 520
P G PS +P R P + + Q+++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGS 83
>06_03_0334 - 19660526-19661755
Length = 409
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 618 PLGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 520
P G PS +P R P + + Q+++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQEYYGQPTPGS 83
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 602 PACAQVAQTQNTFSVGYNNGTDVRLRPVLKNIVYMSLIVDRDEEAPWSAVHKPELLTGQA 423
P C Q+A + + G V++R + ++ L +DR +E P + +P L T A
Sbjct: 254 PMCLQLADSSVRYPAGIAEDVPVKIRDFFIPVDFVVLDMDRGKETP-LILGRPFLSTAGA 312
Query: 422 N 420
N
Sbjct: 313 N 313
>11_04_0444 + 17816207-17817436
Length = 409
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 618 PLGCPSRMRPSRPDPEYVLRRLQQWHGRPSPAS 520
P G PS +P R P + + Q ++G+P+P S
Sbjct: 51 PFGPPSNYQPYRHPPIFQGAQQQDYYGQPTPGS 83
>05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673
Length = 337
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 612 GCPSRMRPSRPDPEYVLRRLQQWHGRPSPASS*EHR----IHVPYRG 484
G R+ S DP V+ + H PSP S HR +HV RG
Sbjct: 219 GVKKRVERSEQDPSMVITTYEGQHTHPSPVSYHMHRQQGLMHVSARG 265
>03_06_0416 - 33780911-33781861
Length = 316
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -1
Query: 474 RGPLVGGTQARTSDRPGQPSECTQLASFQPRYPRRNGRTDAHCGPRAP 331
R P GGT +R + P P+ P P R GR PRAP
Sbjct: 17 RSPTAGGTPSRLAVAPPSPTTPQCAIPASPHTPGR-GRAPPPATPRAP 63
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 704 LGVRTHVDSDGQTLMRLDASERGVE-REFAHW 612
LGV +H D G T++ +D RG++ + HW
Sbjct: 230 LGVASHSDPGGMTMLLVDDHVRGLQVKNAGHW 261
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 28.7 bits (61), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 618 GKLALYTALGGIKPHQCLPITIDVGTNTQSMLD 716
GK + + GG+KP Q +PI D N + LD
Sbjct: 241 GKCVMGSLFGGVKPKQDIPILADKYLNKELELD 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,893,559
Number of Sequences: 37544
Number of extensions: 623381
Number of successful extensions: 1854
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3782886900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -