Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L14
         (1230 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   312   3e-85
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   8.9  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  312 bits (766), Expect = 3e-85
 Identities = 141/237 (59%), Positives = 178/237 (75%), Gaps = 2/237 (0%)
 Frame = +3

Query: 147 GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIY 326
           G+D LK PGLNKGMAF++ ERQ LG+HGLLPP   T+E+Q       + +  + L KYI 
Sbjct: 51  GIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYIQ 110

Query: 327 LMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKG--H 500
           L  L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D     
Sbjct: 111 LDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISK 170

Query: 501 VYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPIT 680
           ++ +L NWP  +VRAIV+TDGERILGLGDLG  G+GIPVGKLALY AL GI+P  CLP+ 
Sbjct: 171 IHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVI 230

Query: 681 IDVGTNTQSMLDDPLYIGLRQRRVRGPDYDELXDEFMRAVVRRYGQNCLVXFEDFGN 851
           +DVGT+   +L+DP Y GLR++RVRGP+YD L D FM+A  +R+G++ L+ FEDFGN
Sbjct: 231 LDVGTDNSELLNDPFYTGLRRKRVRGPEYDTLVDNFMKAATKRFGRDTLIQFEDFGN 287



 Score = 31.9 bits (69), Expect = 0.96
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 857 AFRLLXKYRNKYXTFNDNIXGT 922
           A+RLL +Y+ +Y  FND+I GT
Sbjct: 290 AYRLLDRYKGEYCMFNDDIQGT 311


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 307 HLTSTSILWGSWTAMSICSTVS 372
           H TS ++LW SW+A+ I +T+S
Sbjct: 200 HETSPAVLWKSWSAILILTTLS 221


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 234  LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 356
            L  ++K  + ++EL +  + ++E+ L+ ++   G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 234  LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 356
            L  ++K  + ++EL +  + ++E+ L+ ++   G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,243,632
Number of Sequences: 27780
Number of extensions: 470706
Number of successful extensions: 1346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)