Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L13
(1312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 1.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 1.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 2.5
SPAC167.04 |pam17||presequence translocase-associated motor subu... 28 3.3
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 28 3.3
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 28 3.3
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 7.6
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 7.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 7.6
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/39 (48%), Positives = 19/39 (48%)
Frame = +3
Query: 480 HLTSTNGSGNFLDHSKELNVKPPRNIGIVKNLFHHLLYR 596
HL GN L SK N K PRN IV L H LYR
Sbjct: 374 HLHCDPHGGNVLIRSKPKNSKSPRNYEIV--LLDHGLYR 410
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -2
Query: 267 YCRKYLSNLA--FLASLSESVDMSRSLGTHEEELDEK 163
Y +K L+N+ F A SE+ D+SR L T E+LD+K
Sbjct: 184 YFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKK 220
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 188 VPSERDISTDSEREARKARLDKYLRQYTNKRTSKK----TLTPSNKVSEVVTKPTNNNDP 355
+ S IST+ + + +K ++ N ++++K T TPS +SE KP++ +
Sbjct: 1207 IKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTK 1266
Query: 356 VKTGYDEITIANFLQSLRAQKTEPYLQITTAPK 454
++T E + + ++++K + + + K
Sbjct: 1267 IETPSREQSRSQTASPVKSEKDDGNVSLNAEQK 1299
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 123 RPVLVIKRKKNPKTSHQALPRGCRVNETYL--QIRKGKPEKLGW 248
RP LV+KR ++PK L + C +TY I++ KP+ L W
Sbjct: 6 RPGLVVKRLQSPKI-FLTLWKTCYNVKTYSTESIKQKKPQDLNW 48
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 185 WVPSERDISTDSEREARKARLDKYLRQYTNKRTSKKTLTPSNKVSEVVTKPTNN 346
++P+E I T SER ARL+KY T+ TL P + V + + P+ N
Sbjct: 168 YLPAEY-IETPSER---LARLNKYKNSETSNSQQSVTLPPLDIVEKTLEAPSPN 217
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 110 KEMDEAGPSNKKEEEPQDFXXXXXXWVPSERDISTDSEREARKARLDKYLRQYTN--KRT 283
K+ + K++EE ++ W + RD+S S + A + KYL++ + ++T
Sbjct: 437 KKDEREKEKRKRQEEEEENNLDRTSW--TGRDLSASSTDHSLNASVGKYLKKEVSLEEKT 494
Query: 284 SKKTLTPSNK 313
T+ P K
Sbjct: 495 FTSTVNPKKK 504
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 613 FKFYCRRYNRWWNKFLTIPMFRGGFTF 533
F+ YN WW F+T P F G + F
Sbjct: 545 FQLCSENYNWWWRSFIT-PGFCGIYVF 570
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 224 REARKARLDKYLR--QYTNKRTSKKTLTPSN-KVSEVVTKPTNNNDPVKTGYDEITIANF 394
+ +++ LDK R Q+T K+ + + +++ + N+D +KT YDE + N
Sbjct: 369 KNQKQSLLDKQSRTSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLKTEYDE--MENE 426
Query: 395 LQSLRAQKTEPYLQITTAPKRIS 463
L++ ++K E + + + R+S
Sbjct: 427 LKAKLSRKKEIEISLESQGDRMS 449
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 605 EFEQTNEEDIESEHN----MNDESDRSDDIVLITNKRDSALN 718
EF++ + +D + N +NDES S D+V+I ++ D N
Sbjct: 408 EFDEFDIDDADFTFNTTDPINDESGASSDVVVIDDEEDDIEN 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,721
Number of Sequences: 5004
Number of extensions: 72663
Number of successful extensions: 259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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