Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L13
         (1312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    32   0.78 
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    31   2.4  
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    31   2.4  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    31   2.4  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    31   2.4  
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    31   2.4  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    30   3.1  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    29   7.3  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    29   7.3  

>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 512 FRSFERVKCETAPEHRYRQEFIPPPIIPPTVEFEQTNEEDIES 640
           F SFE  K + +P++    E    P +PP    ++  E++I S
Sbjct: 410 FSSFESTKSDISPQNNQNVEETSTPTVPPNSTIQENEEDEIMS 452


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
 Frame = +2

Query: 209 STDSEREARKARLDKYLRQYTNKRTSKKTLTPSNKVSEVVTKPTNNNDP-VKTGYDEITI 385
           STD E  +   R+DK L Q  +K+T+K+   P++ V + +    + + P  K      T 
Sbjct: 177 STDHEDPSLTFRVDKELEQSESKKTTKR---PASGVKKTLKASISIDAPKPKPRPRPQTS 233

Query: 386 ANFLQSLRAQKTEPYLQITTAPKRISMDSDTTLNFHEWFRELFRSFERVKCE 541
           AN        K +  +Q++    +++  SD   +  EW ++  R     K +
Sbjct: 234 ANLSTKTIKDKDQEMMQMSMFGSKLNKPSDA--HHKEWLQKKEREIREKKAK 283


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 218 SEREARKARLDKYLRQYTNKRTSKK-TLTPSNK 313
           +EREA+KA + K L +  NK+ +KK  LTP  K
Sbjct: 14  AEREAKKAEVRKRLEEAGNKKKAKKGFLTPERK 46


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 578 PPPIIPPTVEFEQTNEEDIESE-HNMNDESDRSDDIVLITNKRDSALNVLDKTNETND 748
           P P   P ++ EQ  EED E E  +  +E +   D V +  +  S     DK++E ND
Sbjct: 427 PDPGAIPNLDAEQNEEEDEEEEGEDEEEEEENEQDDVAVKEEEQS-----DKSDEEND 479


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 578 PPPIIPPTVEFEQTNEEDIESE-HNMNDESDRSDDIVLITNKRDSALNVLDKTNETND 748
           P P   P ++ EQ  EED E E  +  +E +   D V +  +  S     DK++E ND
Sbjct: 427 PDPGAIPNLDAEQNEEEDEEEEGEDEEEEEENEQDDVAVKEEEQS-----DKSDEEND 479


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 218 SEREARKARLDKYLRQYTNKRTSKK-TLTPSNK 313
           +EREA+KA + K L +  NK+ +KK  LTP  K
Sbjct: 14  AEREAKKAEVRKRLEEAGNKKKAKKGFLTPERK 46


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = +2

Query: 386 ANFLQSLRAQKTEPYLQITTAPKRISMDSDTTLNFHEWFRELFRSFERVKCETAPEHRYR 565
           A+ L   + + + P  + TT    +S + DT+    +  +   +  +  K   AP  + R
Sbjct: 182 ASILSDEKVRPSTPAPEATTEDVPVSQELDTSFESRQDKQNPLKVVKTQKGAEAPPTKLR 241

Query: 566 QEFIPPPII--PPTVEFEQTNEEDIESEHNMNDESD 667
               PP  +   P VEF+Q     IE + + +D S+
Sbjct: 242 VPMHPPSRVEAAPVVEFQQPAVPLIEIKSDADDISE 277


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 542 TAPEHRYRQ-EFIPPPIIPPTVEFEQTNEEDIESEHNMNDESDRSDDIVLITNKR 703
           +APE R +   F PPP + P    +  NEE IE +  + D  +    +  IT KR
Sbjct: 51  SAPEKRAKTASFSPPPALSPAHSIQMENEE-IEVKMEV-DSDEEEKKLPKITEKR 103


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 221 EREARKARLDKYLRQYTNKRTSKKTLTPSNK 313
           EREA+KA + K L +   K+  K  LTP  K
Sbjct: 28  EREAKKAEVRKRLEEAGQKKQKKGFLTPERK 58


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 221 EREARKARLDKYLRQYTNKRTSKKTLTPSNK 313
           EREA+KA + K L +   K+  K  LTP  K
Sbjct: 28  EREAKKAEVRKRLEEAGQKKQKKGFLTPERK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,838
Number of Sequences: 27780
Number of extensions: 403341
Number of successful extensions: 1649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)