Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L13
         (1312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    30   0.039
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.83 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   7.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 30.3 bits (65), Expect = 0.039
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +2

Query: 230 ARKARLDKYLRQYTNKRTSKKTLTPSNKVSEVVTKPTNNNDPVKTGYDEITIANFLQSLR 409
           A+K + DK +     K  S ++LT +  VS + T  T+NN  ++     +     ++SLR
Sbjct: 696 AKKVKKDKDIILNVPKE-STQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLR 754

Query: 410 AQ--KTEPY-LQITTA 448
            +  +T PY +++T A
Sbjct: 755 LEGDETPPYGMELTEA 770


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.83
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 497 WFRELFRSFERVKCETAPEHRYRQEFIPPPIIPPTVEFEQTNEEDIESEHNMNDESDRS 673
           W R+  R+F R+ C   P  R R+ + P     P+  F         S H++    + S
Sbjct: 393 WSRDFRRAFVRILCACCP-GRVRRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESS 450


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 245 LDKYLRQYTNKRTSKKTLTPSNKVSE---VVTKPTNNNDPVKTGY 370
           + + LR+   +R  ++T  P ++ ++   V++ P NNND   T +
Sbjct: 167 VQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPPLNNNDATPTDF 211


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 WTRPVLVIKRKKNPKTSHQA 176
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 WTRPVLVIKRKKNPKTSHQA 176
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 WTRPVLVIKRKKNPKTSHQA 176
           WT P+  +KRK   K+ ++A
Sbjct: 507 WTAPIYTLKRKGLIKSENEA 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,309
Number of Sequences: 438
Number of extensions: 5561
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45143688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)