Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L12
(1321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.029
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 34 0.038
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.20
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.82
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.82
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.82
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 4.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.7 bits (76), Expect = 0.029
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 435 PXPPPPPXXLXPQKXXPPPPXP 370
P PPPPP P PPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 33.1 bits (72), Expect = 0.088
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 450 PXXXXPXPPPPPXXLXPQKXXPPPP 376
P P PPPPP P + PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 34.3 bits (75), Expect = 0.038
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = -3
Query: 698 FXFSPFFXXLXFFFFFXXXXXXXXXXXFFXPFSPFXXPSXQXFFFXFFFFSXXSXFPXLX 519
F FF FFFFF F P+ P FF FF+FS S F L
Sbjct: 69 FTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVP----FFCFFFYFSLFSFFSFLF 124
Query: 518 XPXXF 504
F
Sbjct: 125 TSLHF 129
Score = 30.3 bits (65), Expect = 0.62
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -2
Query: 684 FFFXXXXFFFFXSXXXXXXXXXFFXXLFPXXXPFXPXFFFFXFF-FFXF 541
FF+ FFFF S F PF FF+F F FF F
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSF 122
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.20
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 450 PXXXXPXPPPPPXXLXPQKXXPPPPXP 370
P P PPPPP + PPPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.47
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 435 PXPPPPPXXLXPQKXXPPPPXPS 367
P PPPPP PPPP P+
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPA 784
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = -1
Query: 430 PPPPPXX----PXPPKXXXPPPXXLLXXFPXPP 344
PPPPP P P PPP ++ P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -1
Query: 436 PXPPPPPXXPXPPKXXXPPPXXLLXXFPXPP 344
P PPP P PP PPP + P PP
Sbjct: 750 PVPPPAPIMGGPP--PPPPPPGVAGAGPPPP 778
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.82
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 450 PXXXXPXPPPPPXXLXPQKXXPPPP 376
P P PPPPP + P PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 436 PXPPPPPXXPXPPKXXXPPPXXLLXXFPXPP 344
P PPPPP PP PP P PP
Sbjct: 1705 PTPPPPPM-SVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.82
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 348 GXGKXXRRXXGGGXXXFGGXGXXGGGGGXG 437
G G R GG FGG G GGG G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.82
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +2
Query: 335 KXGGGXGEXXKEGXGGGGXXFWGXRXXGGGGGXGXXXXGXKKKKXXXKXXXGXXKGGKXG 514
+ G G + G GG F G R GGG G G + + + G GG+ G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGRGG 66
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +2
Query: 371 GXGGGGXXFWGXRXXGGGGGXGXXXXGXKKKKXXXKXXXGXXKGGKXGXXVXGEXGXKXK 550
G GG F G R G GGG G G + + G +GG+ G G G K
Sbjct: 13 GSRGGRGGFNGGRG-GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSS-GGRGGAKGG 70
Query: 551 KK 556
K
Sbjct: 71 AK 72
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 436 PXPPPPPXXPXPPKXXXPPP 377
P PPPPP P P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 211 KKKXXEKKKXXKKKKKXV*XKKEXXXXKKK 300
KK+ +KK KK+KK KKE KKK
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -1
Query: 430 PPPPPXXPXPPKXXXPPPXXLLXXFPXPPS 341
PPPPP P PPP PP+
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPA 390
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 450 PXXXXPXPPPPPXXLXPQKXXPPPPXPS 367
P PPPPP P PPP S
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
Score = 23.8 bits (49), Expect(2) = 5.7
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Frame = -1
Query: 436 PXPPPPP------XXPXPPKXXXPPP 377
P PPPPP P PP+ PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPP 362
Score = 21.4 bits (43), Expect(2) = 5.7
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = -1
Query: 490 PPXSFXXXFFFFXSXXXXPXPPPPP 416
PP S + P PPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,916
Number of Sequences: 5004
Number of extensions: 19697
Number of successful extensions: 275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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