Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L11
         (1340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical...    42   0.001

>AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.1 protein.
          Length = 432

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = +2

Query: 188 LLWFGQEHVDXRDXEINSILSLFKIAIKFIEKXCLEKXYWIVELXSEDCVKKMXXRXVXM 367
           L+ F Q HVD R  E  +I S+F I +   EK       +IV   S   V+K+  R + +
Sbjct: 5   LVIFSQSHVDFRIAEFEAICSMFSIKVDLSEKLNTTDHMFIVNFESHLEVRKLLSRSILV 64

Query: 368 KNCIEXWSRAKS 403
           K  IE    A+S
Sbjct: 65  KYAIELSIEAES 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,614,094
Number of Sequences: 27780
Number of extensions: 153920
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3767217436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)