Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L10
(1305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 369 e-103
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 209 7e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 195 1e-50
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 151 3e-37
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 103 4e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 100 9e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 96 1e-20
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 61 4e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 6e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.20
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.35
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 2.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 5.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 7.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 10.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 369 bits (909), Expect = e-103
Identities = 174/211 (82%), Positives = 182/211 (86%)
Frame = +3
Query: 162 EEVAXXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 341
EE+A V+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKR
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKR 62
Query: 342 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 521
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI
Sbjct: 63 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQI 122
Query: 522 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGYAXPXAILXLDLXG 701
+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPI EGYA P AI+ LDL G
Sbjct: 123 IFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
Query: 702 RXLXXXLMXILXXRGXSFXXXXEXEXVXXXK 794
R L LM IL RG +F E E V K
Sbjct: 183 RDLTDYLMKILMERGYTFSTTAEREIVRDIK 213
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 209 bits (510), Expect = 7e-55
Identities = 99/205 (48%), Positives = 135/205 (65%), Gaps = 1/205 (0%)
Frame = +3
Query: 183 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 362
+DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++
Sbjct: 14 IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQR 73
Query: 363 PIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 539
PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 540 TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGYAXPXAILXLDLXGRXLXXX 719
PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPI +G++ P AI ++ GR +
Sbjct: 134 VPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDY 193
Query: 720 LMXILXXRGXSFXXXXEXEXVXXXK 794
L L G E E V K
Sbjct: 194 LQLQLRKSGHELVSSAEKEIVREIK 218
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 195 bits (476), Expect = 1e-50
Identities = 95/212 (44%), Positives = 137/212 (64%), Gaps = 2/212 (0%)
Frame = +3
Query: 165 EVAXXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 338
E A V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 339 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 518
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 519 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGYAXPXAILXLDLX 698
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+ E + LD+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 699 GRXLXXXLMXILXXRGXSFXXXXEXEXVXXXK 794
GR L+ +L +G +F + E V K
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMK 213
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 151 bits (365), Expect = 3e-37
Identities = 86/220 (39%), Positives = 120/220 (54%), Gaps = 32/220 (14%)
Frame = +3
Query: 180 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK--------- 305
++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 306 -----DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 467
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H L
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 468 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSG 623
LTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 128 LTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Query: 624 DGVSHTVPIXEGYAXPXAILXLDLXGRXLXXXLMXILXXR 743
DGV+H +P+ EGY +I + L GR + + +L R
Sbjct: 188 DGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 103 bits (248), Expect = 4e-23
Identities = 53/163 (32%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Frame = +3
Query: 180 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL- 356
V+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIA 83
Query: 357 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 536
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +
Sbjct: 84 RSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142
Query: 537 NTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIXEG 659
N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 143 NAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 99.5 bits (237), Expect = 9e-22
Identities = 57/167 (34%), Positives = 87/167 (52%)
Frame = +3
Query: 162 EEVAXXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 341
+EV+ V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 342 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 521
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 522 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGY 662
MFE+ PA Y+A Q + +ASG+ T ++D G S I +G+
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGF 167
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 95.9 bits (228), Expect = 1e-20
Identities = 52/185 (28%), Positives = 94/185 (50%), Gaps = 2/185 (1%)
Frame = +3
Query: 162 EEVAXXVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 341
EE+ V+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 342 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 515
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 516 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGYAXPXAILXLDL 695
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G I L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Query: 696 XGRXL 710
G L
Sbjct: 182 AGDFL 186
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 60.9 bits (141), Expect = 4e-10
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Frame = +3
Query: 363 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 530
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 531 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIXEGYAXPXAILXLDLXGRXL 710
P +A + ++ LYA G G+V+D G + PI +G A L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 711 XXXLMXIL 734
L +L
Sbjct: 232 TQHLQNLL 239
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 43.6 bits (98), Expect = 6e-05
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 18/206 (8%)
Frame = +3
Query: 180 VVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 359
V+DNG+ KAGFAG P+ + R + G + ++G+E + TL+
Sbjct: 9 VLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTLQ 58
Query: 360 YPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMF 527
+ H G + +W +W N + P ++ +LLT+ + Q++F
Sbjct: 59 FRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVF 118
Query: 528 ETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIXEGYA 665
E F A A L + G T +V+DSG +H +P+ +
Sbjct: 119 EEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSV 178
Query: 666 XPXAILXLDLXGRXLXXXLMXILXXR 743
A+ +D+ G+ L L ++ R
Sbjct: 179 QEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 423 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 566
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 222 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 365
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 330 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 241
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 5.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 359 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 180
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 322 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 206
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 465 LLTEAPLNPKANREKMTQIMFETFN 539
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 479 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRXR 628
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,445
Number of Sequences: 5004
Number of extensions: 56128
Number of successful extensions: 147
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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