Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L07
         (1270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.45 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.45 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.59 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   3.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.3  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   7.3  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   9.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +3

Query: 555 GGGXKIFXGGGXGXXGGGGGGXXFFXGGGXGG 650
           GGG   F GGG G  GGG GG     GGG GG
Sbjct: 241 GGGPGGF-GGGLGGFGGGPGG----FGGGPGG 267



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 556 GGGXKFFXGGVXVXXGGGGGGXXFXGG-GGRGG 651
           GGG   F GG+    G GGG   F GG GG GG
Sbjct: 241 GGGPGGFGGGL---GGFGGGPGGFGGGPGGHGG 270



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 555 GGGXKIFXGGGXGXXGGGGGGXXFFXGGGXG 647
           GGG   F GG  G   G GG   F   GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 556 GGGXKFFXGGVXVXXGGGGGGXXFXGGGGRG 648
           GGG   F GG      G GG   F G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 579 GGGXGXXGGGGGGXXFFXGGGXGGVFXF 662
           GGG G   GG GG     GG  GG+  F
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGF 254


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PPP      PPPPP  P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 30.7 bits (66), Expect = 0.45
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PP      PPPPPP  P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 646 PXPPPXKKXXPPPPPPXXP 590
           P PPP      PPPPP  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PPP       PPPP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 558 GGXKIFXGGGXGXXGGGGGGXXFFXGGGXGG 650
           GG +   GG  G  GG GGG     GGG GG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42



 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 559 GGXKFFXGGVXVXXGGGGGGXXFXGGGGRGG 651
           GG +   GG     GG GGG     GGGRGG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = +1

Query: 559 GGXKFFXGGVXVXXGGGGGGXXFXGGGGRGG 651
           GG   F GG     GGG GG    G GGRGG
Sbjct: 23  GGRGGFGGGRGGARGGGRGGAR-GGRGGRGG 52



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 558 GGXKIFXGGGXGXXGGGGGGXXFFXGGGXGG 650
           GG   F GG  G  GG GG      GG  GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 559 GGXKFFXGGVXVXXGGGGGGXXFXGGGGRGG 651
           GG   F GG     GG GG      GG RGG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +3

Query: 558 GGXKIFXGGGXGXXGGGGGGXXFFXGGGXG 647
           GG   F GG  G  GGG GG     GG  G
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGRGG 52



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 555 GGGXKIFXGGGXGXXGGGGGGXXFFXGGGXG 647
           GGG     GGG G   GG GG     GG  G
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PPP  +    PPPP  P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PPP     PP  PP  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPPXXP 590
           PP PPP     P  PPP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 558 GGXKIFXGGGXGXXGG-GGGGXXFFXGGGXGG 650
           GG   F GG  G  GG GG     F GG  GG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 559 GGXKFFXGGVXVXXGG-GGGGXXFXGGGGRGG 651
           GG   F GG     GG GG      GGG RGG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 616 PPPPPPXXP 590
           PPPPPP  P
Sbjct: 189 PPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -1

Query: 649 PPXPPPXKKXXPPPPPP 599
           P    P     PPPPPP
Sbjct: 179 PATSLPSDYNPPPPPPP 195


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 646 PXPPPXKKXXPPPPPPXXP 590
           P PP  +   PPPPP   P
Sbjct: 352 PLPPQGRSAPPPPPPRSAP 370



 Score = 23.4 bits (48), Expect(2) = 9.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 661 KXXTPPXPPPXKKXXPPPP 605
           K   PP PPP ++    PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPP 326



 Score = 21.0 bits (42), Expect(2) = 9.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 616 PPPPPP 599
           PPPPPP
Sbjct: 337 PPPPPP 342


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 601 GGGGGGXXFXGGGGRGGXXF 660
           GG G G  + G GGRGG  +
Sbjct: 570 GGNGRGGRYSGRGGRGGNAY 589


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 558 GGXKIFXG-GGXGXXGGGGGGXXFFXGGGXGG 650
           GG   F G GG G  GG GGG     GG   G
Sbjct: 451 GGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,272
Number of Sequences: 5004
Number of extensions: 8028
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)