Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_L04
(1291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 32 0.15
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy... 29 1.4
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 29 1.8
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 28 2.4
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 28 3.2
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 4.3
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 27 4.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 5.6
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 27 7.4
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 27 7.4
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 7.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 9.8
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 9.8
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +1
Query: 829 RKRGRTESNXENRKQKLTKIDEDYE--HELTED-SEDVLSLAKRTLQQDXXDTEXILTYX 999
+K+ + + EN+ Q+L I+E Y+ E TE S+D +SL KR + +T+ + T
Sbjct: 71 KKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLN 130
Query: 1000 *LTSD 1014
L S+
Sbjct: 131 SLNSE 135
>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 228
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 586 CLHFETIRKRREIIMRAVQRELIIG 660
C H+E K EII RA ++ +++G
Sbjct: 92 CFHYEATEKHEEIISRAHEKGMLVG 116
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = +1
Query: 655 IGPLNEDQTEKQLHEIAVDESSNDDDLFN--NLRKLRETNADTKKIIRTETANDITKSNN 828
+ L+E+Q E E + + + ++N +K +E N + + E + K
Sbjct: 58 LSDLDENQFEN-FDESKIGREAEEPTIYNLPTFKKKQEPNTIEENL---EVPRKVRKEQK 113
Query: 829 --RKRGRTESNXENRKQKLTKIDEDYEHELTEDSE-DVLSLAKRTL 957
R+RG+ S + +L ++ E+ E LTE + D AK+ L
Sbjct: 114 PRRRRGKRSSTVDALNDELNELGENEEEVLTEQKQLDPTLAAKKEL 159
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Frame = +2
Query: 488 PKPWTKNFSNKYCW-GSVWS-------RLMMNRNPTGEYRAVYILRRSEKDVR*L*GQFK 643
P+P +F N CW G +W + +NRN + +L + D+ + G +
Sbjct: 66 PQPHVDSFGNVLCWNGEIWQINHSDHHKFTLNRNENDGAKLFELLNNNPGDIEKILGSIQ 125
Query: 644 G 646
G
Sbjct: 126 G 126
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.9 bits (59), Expect = 3.2
Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +1
Query: 673 DQTEKQLHEIAVDESSNDDDLFNNLRKLRETNADTKKIIRT-ETANDITKSNNRKRGRTE 849
++++ + E V +SS D+ N + + + + +I + N+I + E
Sbjct: 37 EESKGSITENYVQDSSVDEHDDGNWQPMEVISLEPTHLINDIDDDNEIIEEKKETEKVEE 96
Query: 850 SNXENRKQKLTKI-DEDYEHELTEDSEDVLSLAKRTLQQDXXDTEXILT 993
S E R ++ + D+D +H+L ++ +L +A ++ D++ +T
Sbjct: 97 SELEPRYTRVFRDEDDDQKHQLDSEAIKLLDIADHGNEEISMDSQLEIT 145
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 868 KQKLTKIDEDYEHELTEDSEDVLSLAKRTLQQDXXDTEXILT 993
+ LTK+ + H +T+++ DVLS ++ +Q++ D + T
Sbjct: 408 RSPLTKVIDCVGHAVTKNNNDVLSGLQQLMQEECTDIAVLRT 449
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 673 DQTEKQLHEIAVDESSNDDDLFNNLRKLRETNADTKKIIRTETANDITKSNNRKRG 840
++ ++ + I V S +D +N L TN+D + +R+ D T K+G
Sbjct: 414 NERKENIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQSAMRSRENYDATVDKKAKKG 469
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 751 KLRETNADTKKIIRTETANDITKSNNRKRGRTESNXENRKQKLTKIDEDYEHELTEDSED 930
+L+ +++ KK TET + K + ++ +N K+K++K + EH+ E
Sbjct: 74 QLKGQDSNHKKASLTETKTEKAKV------KPKAKKKNSKEKISKSSKQDEHKTDVHKES 127
Query: 931 VLSLAKRTLQQDXXD 975
V L+K ++ D
Sbjct: 128 VSKLSKNLESRNNRD 142
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 850 SNXENRKQKLTKIDEDYEHELTEDSEDVL 936
SN E KQ +T + + HE+T+D E V+
Sbjct: 198 SNLEPEKQIVTALPDVVVHEITDDDEFVV 226
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +2
Query: 521 YCWGSVWSRLMMNRNPTGEYRAVYILRR 604
YCWG W MN Y+ RR
Sbjct: 188 YCWGDTWQDTKMNTEAVEFLFQAYLRRR 215
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 778 KKIIRTETANDIT-KSNNRKRGRTESNXENRKQKLTKIDEDYEHELTEDSEDVLSLAKRT 954
K I+R A+ T K K+G+ E N K+ K ++ + + +ED+++ K
Sbjct: 144 KHILRNHGASLSTVKFLFSKKGKVEVNLPPEKRDSMKFEDVLDDAIEAGAEDIVNRPKEY 203
Query: 955 LQQDXXDTEXILT 993
+ ++ ILT
Sbjct: 204 IDEEDEGEFLILT 216
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 9.8
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +1
Query: 664 LNEDQTEKQLHEIAVDESSNDDDLFNNLRKLRETNADTKKIIRTETANDITKSNNRKRGR 843
L ED T + I +ES+ D+ + E +A + ++ + K N+R + +
Sbjct: 57 LEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTS-------KKNSRSKPK 109
Query: 844 TESNXENRKQKLTKIDEDYEHELTEDSED 930
+ + + T +DED E+ L D ED
Sbjct: 110 NGGASKRKASRRTVVDEDSEN-LEGDEED 137
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 546 RDHTDPQQYLFEKFFVHGFG*LIGYGHQRCAFRVRIVALRFLVQG 412
RD+ DPQ V FG L G F + ++ R QG
Sbjct: 323 RDNVDPQDVKLPNGLVMAFGALSGSTGATIVFPLNVIRTRLQTQG 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,566
Number of Sequences: 5004
Number of extensions: 70221
Number of successful extensions: 273
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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