Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L02
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    79   1e-15
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    56   8e-09
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    50   9e-07
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   4.0  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   9.3  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
 Frame = +3

Query: 345 AEQFLSKIPPHDDK-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXX 521
           A+  L ++ P  +K  +   G+Y FHY+ +N + Y CI +  + R  AF +L E+     
Sbjct: 29  AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88

Query: 522 XXXXXXXXXX--IPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNID 695
                        PYA   +F   +    + Y+  R  DN+ +++ EL ++  +M KNI+
Sbjct: 89  NSFGEEALQPGLRPYAF-VQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIE 147

Query: 696 NMAMRGEKLELLVNKADNLATGSVSYRATSRTLQRSLFWK 815
           ++  RG+ LE + + + +L   S  Y+  +R +     W+
Sbjct: 148 DLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEALWR 187


>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +3

Query: 405 NYLFH-YIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFG 581
           NY+FH Y   + L     +D ++    A+  LN+I                  A+   F 
Sbjct: 63  NYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWES--GAVTLSFP 120

Query: 582 RVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATG 761
             L T +  Y + +  D I RV  ELDE K+++ K I+++  RGEKL+ L+ ++DNL+T 
Sbjct: 121 E-LDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQ 179

Query: 762 S 764
           S
Sbjct: 180 S 180


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 19/61 (31%), Positives = 40/61 (65%)
 Frame = +3

Query: 645 VHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATGSVSYRATSRTLQRSLFWKNIK 824
           +  ++D+   IM +NI  ++ RGE+L+ L +K DNLA  +  +R  +  +++ ++WK+++
Sbjct: 35  IQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMR 94

Query: 825 M 827
           M
Sbjct: 95  M 95


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 252  LFTMPILFSIVARGT--VVLAKYATCQG-NFTEVAEQFLSKIPPHDDKLTYSHGNYLFHY 422
            LF     FS +A G   +     +T  G +FT   + FL ++   ++ + +S  NY +  
Sbjct: 801  LFRWSATFSNIADGIHRISFNNASTADGKDFTHSVDHFLLRVGSLNNPIVFSSANYSYDL 860

Query: 423  I-AENKLVYF---CITDDKFQRSRAF 488
            +  EN  VY     I  D F+ S  F
Sbjct: 861  LQKENNSVYIKHAAIGADMFRYSLDF 886


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 289 LATILNNIGIVNNRVNDTKNTMLPNHYLQRTPSLGNGIK 173
           L  ++NN G+ +    D   T+  NH L  T +LG  I+
Sbjct: 468 LVIVINNNGVYHGLDTDAYETLRDNHQLP-TTALGTSIR 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,218,497
Number of Sequences: 5004
Number of extensions: 81902
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)