Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L01
         (1269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    34   0.036
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    29   1.4  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    28   3.2  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    27   5.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   7.3  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   7.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   9.6  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 90   EYLPDSNQPISGFHRCNVAVMLLCDVVLDGVEIDWSIHVPLMLHIVFLGMDHTRWIVHQH 269
            +  P     IS +  C ++++LL D++ +   I  +  V  +LH  F+  DH   IV + 
Sbjct: 1441 DLFPSEKNHIS-YSPCQLSLLLLMDILPNPSIITVTDDVATILHAAFIQFDHYSRIVQEQ 1499

Query: 270  CRQ 278
            C+Q
Sbjct: 1500 CQQ 1502


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 185 LDPVEDDVAEQHDRHVAPVEAGDRLVA 105
           L  VEDD  ++HD     VE G ++VA
Sbjct: 623 LQVVEDDAVDRHDERCRVVERGSKIVA 649


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 662 GSIRQEVHQ*LDDVSDRHLGRLRLGVFRD--RVRVRLAGYDHRERREVVSFTF 510
           GS   E    +D + DRH+ ++R+    D  R R+R A +  ++R  +  F F
Sbjct: 151 GSEHGERRSAMDGLRDRHIRKVRVSQLLDLQRRRIRPADHTTKDRYGIQDFNF 203


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 715 SGAVNRCRPWWGTCCECSXSPCRTRWCRSAGRXP 816
           S A   C   WGTC       C +RW  +    P
Sbjct: 61  SAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCP 94


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 733 CRPWWGTCCECSXSPC 780
           C+  WGTC +CS   C
Sbjct: 310 CKLRWGTCVQCSDKNC 325


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 429 SFDKQPQCAHSPRSHVRSLSSDPQTTPEGETDNFPSLP 542
           S DK+ Q  HSP+  V++ SS  Q        +  SLP
Sbjct: 143 SKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASLP 180


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 657 RPTHMPLWQYEDITAKVWTLRSCQQMQTLVGHVLRV 764
           R TH+ +  +   + ++W   +C++ +T+ GH  RV
Sbjct: 302 RGTHLAVGTHNG-SVEIWDAATCKKTRTMSGHTERV 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,681
Number of Sequences: 5004
Number of extensions: 51184
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)