Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_L01
         (1269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    52   1e-06
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      52   1e-06
U41749-3|AAB52485.2|  120|Caenorhabditis elegans Hypothetical pr...    31   1.7  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    29   7.0  

>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = +3

Query: 90   EYLPDSNQPISGFHRCNVAVMLLCDVVLDGVEIDWSIHVPLMLHIVFLGMDHTRWIVHQH 269
            ++LP   QP+  F++  V ++L+CD++     +DWS  + L+LH   L +D  R  + +H
Sbjct: 1588 QFLPPVVQPVQFFNKSEVGLLLVCDIIRTRCSVDWSESMALLLHFSILRLDSLRPALCRH 1647

Query: 270  CRQ 278
             RQ
Sbjct: 1648 ARQ 1650



 Score = 37.9 bits (84), Expect = 0.015
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 633  SLVHFLANRPTHMPLWQYEDITAKVWTLRSCQQMQTLVGHVLRVFRESLPXALVSERWAX 812
            S V F  +     P W  ED  ++ W + S +Q+   V H++R+    +P  ++   W  
Sbjct: 1728 SAVVFCMSEEMDTPFWANEDANSRNWRVPSFEQLSCTVHHIVRLLINKMP--MIEVIWTQ 1785

Query: 813  TXLXLGLSCPSR 848
              + + LS  +R
Sbjct: 1786 LAMKMALSTSNR 1797


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = +3

Query: 90   EYLPDSNQPISGFHRCNVAVMLLCDVVLDGVEIDWSIHVPLMLHIVFLGMDHTRWIVHQH 269
            ++LP   QP+  F++  V ++L+CD++     +DWS  + L+LH   L +D  R  + +H
Sbjct: 1616 QFLPPVVQPVQFFNKSEVGLLLVCDIIRTRCSVDWSESMALLLHFSILRLDSLRPALCRH 1675

Query: 270  CRQ 278
             RQ
Sbjct: 1676 ARQ 1678



 Score = 37.9 bits (84), Expect = 0.015
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 633  SLVHFLANRPTHMPLWQYEDITAKVWTLRSCQQMQTLVGHVLRVFRESLPXALVSERWAX 812
            S V F  +     P W  ED  ++ W + S +Q+   V H++R+    +P  ++   W  
Sbjct: 1756 SAVVFCMSEEMDTPFWANEDANSRNWRVPSFEQLSCTVHHIVRLLINKMP--MIEVIWTQ 1813

Query: 813  TXLXLGLSCPSR 848
              + + LS  +R
Sbjct: 1814 LAMKMALSTSNR 1825


>U41749-3|AAB52485.2|  120|Caenorhabditis elegans Hypothetical
           protein F09E10.6 protein.
          Length = 120

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 475 TCDLGECAHWGCLSNDASGSVKLC*T 398
           +CD GEC   GC   D+ G++  C T
Sbjct: 67  SCDFGECRREGCNKRDSGGTICCCST 92


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 690 DITAKVWTLRSCQQMQTLVGHVLRVFR 770
           D+T K+W +     +QT+ GH   VFR
Sbjct: 544 DMTIKIWNISEKSCLQTISGHSCAVFR 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,994
Number of Sequences: 27780
Number of extensions: 313030
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)