Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K24
         (1220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1355 - 29522847-29523494                                         30   4.2  

>06_03_1355 - 29522847-29523494
          Length = 215

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +2

Query: 179 LIYKIRMPYIMVMGSLRMPNLTKDEGATVYGLNSEERAKLVMDLNSSFTTVIASSSDLER 358
           LIYK RMPY +V+   ++  L  D+G T+  L   E    VM  N++ +   AS + ++ 
Sbjct: 53  LIYKPRMPY-LVVSDAQLVRLDYDQGGTIDYL---EALVTVMARNTN-SRADASFARVDL 107

Query: 359 VVR------VTQRGFTLVVVNRIHALFGYDVVSHAMAM 454
            +R         R    VV +   A   YDVVS   A+
Sbjct: 108 ALRFHGADVARLRAAPFVVASASAAPLRYDVVSKGRAL 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,634,074
Number of Sequences: 37544
Number of extensions: 369893
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)