Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K24
         (1220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   8.8  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    29   8.8  

>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 218  GSLRMPNLTKDEGATVYGLNSEERAKL-VMDLNSSFTTVIASSSDLERVVRVTQRGFTLV 394
            G  R+P++T+D    ++  +   R++  +M  +SS TT   SSS+L      T    +  
Sbjct: 1174 GISRLPSVTEDPEIGIFAKSFPGRSRSNLMSSSSSTTTTTLSSSNLLNPRGTTSSSSSKS 1233

Query: 395  VVNRIHALFGYDVVSHAMAMTNANRE 472
            V  RI   +  D  +  + M N NR+
Sbjct: 1234 VFARISPSWLSDTCAE-LIMRNNNRK 1258


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 218  GSLRMPNLTKDEGATVYGLNSEERAKL-VMDLNSSFTTVIASSSDLERVVRVTQRGFTLV 394
            G  R+P++T+D    ++  +   R++  +M  +SS TT   SSS+L      T    +  
Sbjct: 1174 GISRLPSVTEDPEIGIFAKSFPGRSRSNLMSSSSSTTTTTLSSSNLLNPRGTTSSSSSKS 1233

Query: 395  VVNRIHALFGYDVVSHAMAMTNANRE 472
            V  RI   +  D  +  + M N NR+
Sbjct: 1234 VFARISPSWLSDTCAE-LIMRNNNRK 1258


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
            protein KLP-12 protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 218  GSLRMPNLTKDEGATVYGLNSEERAKL-VMDLNSSFTTVIASSSDLERVVRVTQRGFTLV 394
            G  R+P++T+D    ++  +   R++  +M  +SS TT   SSS+L      T    +  
Sbjct: 1178 GISRLPSVTEDPEIGIFAKSFPGRSRSNLMSSSSSTTTTTLSSSNLLNPRGTTSSSSSKS 1237

Query: 395  VVNRIHALFGYDVVSHAMAMTNANRE 472
            V  RI   +  D  +  + M N NR+
Sbjct: 1238 VFARISPSWLSDTCAE-LIMRNNNRK 1262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,316
Number of Sequences: 27780
Number of extensions: 333518
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)