Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K21
         (1257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    31   1.9  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           30   3.3  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   5.8  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 359
           R  +V WN +   E  EAYR K+     P+RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = -3

Query: 1123 PVXXRXGTGXXXGGXQGXTPXXXYSPXGXXXXXLGXXFXDXCQGGGAYGKTPAT 962
            P     G     GG  G +P    SP G      G        GGGAYG +P+T
Sbjct: 101  PSPSHGGAAPSHGGGYGASPPVTPSPGGGY----GGGSPAPSHGGGAYGSSPST 150


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 219 GCGGAVFYTLRLALRNPDVSWNKKTNPEP 305
           GC  AV  TL  AL   +    KKTNP+P
Sbjct: 385 GCNAAVMSTLLSALVAVEACLGKKTNPQP 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,779,899
Number of Sequences: 37544
Number of extensions: 502308
Number of successful extensions: 1059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)