Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K20
         (1283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    83   1e-16
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    54   3e-08
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    27   5.6  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   5.6  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   5.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   7.4  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
 Frame = +3

Query: 144 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 323
           Y+A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL SL FQ+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60

Query: 324 ITRIVTAVDSQPM-FDGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 497
           +   ++ +D+QP    G V++ V G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 61  VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
 Frame = +3

Query: 147 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLT 314
           D IG  FVQ+YYT  +    R +    Y  +++ +     E + L  G  +I  K+  L 
Sbjct: 16  DEIGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLD 73

Query: 315 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 494
           FQ    +++ VDS    +GG++I VLG +         + QTF L    + ++V +DIFR
Sbjct: 74  FQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 595 LDIW-YTLYFSCIYFVKEFMKLKGRDDYEIMIMIDLVI 705
           LDIW + + F+ + F K+    +GRD+Y+ ++ I  V+
Sbjct: 217 LDIWSFGVMFAALIFKKDTF-FRGRDNYDQLVKIAKVL 253


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 751 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 662
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 799 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 701
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -2

Query: 505 WMPKRKMSC*T*NESPSGFNTNVCMYRCGGSSSHFNLPRTLIKTPPSNIGWESTAVTILV 326
           W  + K  C +   SP G N+++ +YR    +  F++P   I       GW     TI+ 
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAID------GWGQDLRTIMA 436

Query: 325 I 323
           I
Sbjct: 437 I 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,514,552
Number of Sequences: 5004
Number of extensions: 92716
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)