Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_K17
(1282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.64
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 1.5
06_01_0486 - 3455030-3455770 31 2.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.4
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 30 4.5
03_01_0515 - 3864796-3865425 29 6.0
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.64
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = -2
Query: 1113 PPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
PP P P P P P PP PP PG G A PP PPP
Sbjct: 619 PPPPPPPPLPNHSVLPPPPPPPP---PPSLPNRLVPP---PPAPGIGNKFPAPPPPPPPP 672
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/69 (24%), Positives = 19/69 (27%)
Frame = -2
Query: 1113 PPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
PP P P P P PP PP P + PP PPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPP 609
Query: 933 XXXNXKXXP 907
+ P
Sbjct: 610 PILPNRSVP 618
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = -2
Query: 1065 PXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPPXXXN 922
P P G + PP PP P PP PPP N
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPN 596
Score = 29.1 bits (62), Expect = 7.9
Identities = 23/99 (23%), Positives = 24/99 (24%)
Frame = -2
Query: 1203 GGGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXX 1024
G P PP P PP P P P P P
Sbjct: 556 GNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPP---PPIL 612
Query: 1023 XEXXXPPXXQPPXPGXGRFXXAXKPPXPPPXXXNXKXXP 907
PP PP P PP PPP + P
Sbjct: 613 PNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVP 651
>03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 1008 PPXXQPPXPGXGRFXXAXKPPXPPP 934
PP PP P + A KPP PPP
Sbjct: 354 PPPPPPPPPPPPKLNTAPKPPPPPP 378
>06_01_0486 - 3455030-3455770
Length = 246
Score = 30.7 bits (66), Expect = 2.6
Identities = 23/90 (25%), Positives = 24/90 (26%)
Frame = -2
Query: 1203 GGGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXX 1024
GGG G PP P Y P P P P P
Sbjct: 50 GGGHHGKPPEHHHHHKPPPSPRCPSCHPPYTPP--TPRPPPTPPYVPSPPPYVPPYIPPP 107
Query: 1023 XEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
PP PP P + PP PPP
Sbjct: 108 TPPYVPPYIPPPTP---PYVPPPTPPSPPP 134
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.4
Identities = 25/99 (25%), Positives = 27/99 (27%)
Frame = -2
Query: 1203 GGGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXX 1024
GG P PP P + PP G P P P P
Sbjct: 16 GGFPPQPPPMNPYGPPPPQQPA----YGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFN 71
Query: 1023 XEXXXPPXXQPPXPGXGRFXXAXKPPXPPPXXXNXKXXP 907
P QPP P + PP PPP N P
Sbjct: 72 FGPGPPQQQQPPPPPQMYY---QPPPPPPPYGVNSSQPP 107
>10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -2
Query: 1008 PPXXQPPXPGXGRF-XXAXKPPXPPP 934
PP PP P RF KPP PPP
Sbjct: 328 PPAPPPPPPPPSRFNNTTPKPPPPPP 353
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = -2
Query: 1113 PPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P P P G P P P S PP PP P PP PPP
Sbjct: 55 PSVTSSPPPPAAGPLMPPPPPPPSVTSSP------PPPPLPPPPPPPAASPPPPPPSPPP 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,309,938
Number of Sequences: 37544
Number of extensions: 475334
Number of successful extensions: 1169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -