Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_K17
(1282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.76
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.76
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 31 2.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.4
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.76
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Frame = -2
Query: 1113 PPXXGX--PXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXX--QPPXPGXGRFXXAXKPP 946
PP G P P P P PG PP PP P G PP
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Query: 945 XPPP 934
PPP
Sbjct: 350 PPPP 353
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 1095 PXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P P G P P PG PP PP G PP PPP
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP--PPPPSRFGPPGMGGMPPPPPP 339
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Frame = -2
Query: 1113 PPXXGXPXXPXXGXXXPX---PTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPX 943
P G P P G P P P + PP +PP P G PP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH---GMIPPP 384
Query: 942 PPP 934
PPP
Sbjct: 385 PPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.76
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Frame = -2
Query: 1113 PPXXGX--PXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXX--QPPXPGXGRFXXAXKPP 946
PP G P P P P PG PP PP P G PP
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Query: 945 XPPP 934
PPP
Sbjct: 360 PPPP 363
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 1095 PXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P P G P P PG PP PP G PP PPP
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP--PPPPSRFGPPGMGGMPPPPPP 349
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Frame = -2
Query: 1113 PPXXGXPXXPXXGXXXPX---PTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPX 943
P G P P G P P P + PP +PP P G PP
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH---GMIPPP 394
Query: 942 PPP 934
PPP
Sbjct: 395 PPP 397
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 1110 PXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPPX 931
P G P P P P PP PP P A PP PPP
Sbjct: 596 PNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 655
Query: 930 XXNXKXXP 907
+ P
Sbjct: 656 PPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 1110 PXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPGXGRFXXAXKPPXPPPX 931
P G P P P P PP PP P A PP PPP
Sbjct: 422 PNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 481
Query: 930 XXNXKXXP 907
+ P
Sbjct: 482 PPSGAGGP 489
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical protein
B0035.1b protein.
Length = 341
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 1116 YPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPG 979
YPP G P P G P P PG P PP PG
Sbjct: 159 YPPPRGYPPAPAPGVYMP-PPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical protein
B0035.1a protein.
Length = 298
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 1116 YPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEXXXPPXXQPPXPG 979
YPP G P P G P P PG P PP PG
Sbjct: 159 YPPPRGYPPAPAPGVYMP-PPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -2
Query: 1194 PXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEX 1015
P G PP + P PP G P P G P PT P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGS--PPPPPAAGSPPPPRTGSPPPPPTGSP---------P 281
Query: 1014 XXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P PP P G PP PPP
Sbjct: 282 PPPAGGSPPPPRAG------SPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -2
Query: 1194 PXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEX 1015
P G PP + P PP G P P G P PT P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGS--PPPPPAAGSPPPPRTGSPPPPPTGSP---------P 302
Query: 1014 XXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P PP P G PP PPP
Sbjct: 303 PPPAGGSPPPPRAG------SPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -2
Query: 1194 PXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXXEX 1015
P G PP + P PP G P P G P PT P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGS--PPPPPAAGSPPPPRTGSPPPPPTGSP---------P 287
Query: 1014 XXPPXXQPPXPGXGRFXXAXKPPXPPP 934
P PP P G PP PPP
Sbjct: 288 PPPAGGSPPPPRAG------SPPPPPP 308
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Frame = -2
Query: 1200 GGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXX 1021
GG PP P PP G P P G P P S
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGP 758
Query: 1020 EXXXPPXX----QPPXPGXGRFXXAXKPPXPP 937
PP PP P G F PP PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Frame = -2
Query: 1200 GGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXX 1021
GG PP P PP G P P G P P S
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGP 758
Query: 1020 EXXXPPXX----QPPXPGXGRFXXAXKPPXPP 937
PP PP P G F PP PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/92 (27%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Frame = -2
Query: 1200 GGPXGXPPXXXXXRXXPXXXXXXXFFXXYPPXXGXPXXPXXGXXXPXPTXXPGXXXSXXX 1021
GG PP P PP G P P G P P S
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGP 341
Query: 1020 EXXXPPXX----QPPXPGXGRFXXAXKPPXPP 937
PP PP P G F PP PP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,461,983
Number of Sequences: 27780
Number of extensions: 419818
Number of successful extensions: 1213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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