Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K15
         (1225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPPXXPP 518
           PPP     PP  PPP  PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = -1

Query: 571 PPXXXXXPPPXP---PPXXPPPXP 509
           PP     PPP P   PP  PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPPXXPPP 515
           PPP      PP  PP  PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 549 PPLXPPPXXPPPG 511
           PP  PPP  PPPG
Sbjct: 5   PPGNPPPPPPPPG 17


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 550 PPPXPPPXXPP 518
           PPP PPP  PP
Sbjct: 238 PPPPPPPTLPP 248



 Score = 23.4 bits (48), Expect(2) = 6.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 550 PPPXPPPXXPPPXP 509
           P P PPP  PP  P
Sbjct: 234 PLPAPPPPPPPTLP 247



 Score = 21.4 bits (43), Expect(2) = 6.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 568 PXXXXXPPPXPPP 530
           P     PPP PPP
Sbjct: 184 PSDYNPPPPPPPP 196



 Score = 21.0 bits (42), Expect(2) = 2.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 571 PPXXXXXPPPXPPP 530
           P      PPP PPP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 574  PPPXXXXXPPPXPPPXXPPPXP 509
            PPP      P  PP   PPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 574  PPPXXXXXPPPXPPPXXPPPXP 509
            P P      PP PPP   PP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 574  PPPXXXXXPPPXPPPXXPPPXP 509
            P P      PP PPP   PP P
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVP 1220


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPPXXPPP 515
           PPP      PP PPP  PPP
Sbjct: 766 PPPGVAGAGPPPPPP--PPP 783



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPP-XXPPPXP 509
           PPP     P P P P   PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPPXXPPPXP 509
           P P     PPP P    PPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
 Frame = -1

Query: 574 PPPXXXXXPPPXPPP-----XXPPPXP 509
           PP      PPP PPP       PPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 994,131
Number of Sequences: 5004
Number of extensions: 14938
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)