Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K14
         (1349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    48   2e-06
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    30   0.64 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   1.5  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 266 SMSLMTLVNLFMQSH-FLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELF 442
           S+ L  L+  F+ S  F+  A    G ++ CG++LFDT  I+   R   ++F+  +L L+
Sbjct: 186 SLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLY 243

Query: 443 IDFIGMFRRLVIIL 484
           +DFI +F R++ IL
Sbjct: 244 LDFINLFIRILQIL 257


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -3

Query: 300 INRLTKVISDIDVN--SVINVPPRNSQLPRSASIAAAEKHTNTXGSAEQSSYYDRWVNYT 127
           ++ +T + S++DV+  S IN   +N  +P S+  +   K + +  + E  S +  W++YT
Sbjct: 279 LSPMTPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYT 338

Query: 126 DIF 118
           +++
Sbjct: 339 EMY 341


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 269 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHAL 433
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V+  L
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,373
Number of Sequences: 5004
Number of extensions: 60568
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 743204572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)