Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_K11
(1222 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical pr... 124 1e-28
AC025716-6|AAK95889.1| 401|Caenorhabditis elegans Hypothetical ... 33 0.31
Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical pr... 33 0.54
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 32 0.95
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 32 0.95
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 32 0.95
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 31 1.3
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 31 1.3
Z96047-5|CAB09415.1| 379|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.0
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 5.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.0
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 29 6.7
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 29 6.7
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 6.7
U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical pr... 29 8.8
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 29 8.8
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 29 8.8
>Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical
protein T06E6.1 protein.
Length = 431
Score = 124 bits (299), Expect = 1e-28
Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 5/251 (1%)
Frame = +1
Query: 148 LDIFVGSTXGSFKHVXXXXXXXXXXXXCIENLVDVKSLQ-KGEGITCMEWGNKEQTEILI 324
+D +VG+T G+ K +NL ++KSL K + IT M W +++QTEILI
Sbjct: 1 MDCYVGATTGALKGAILKENT-------FQNLNEIKSLDPKSDEITSMIWNDEQQTEILI 53
Query: 325 GKKNQQIQVYHTLQGNKC-IYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDAN--E 495
+ N+ +Q+ + I T G + GL K + +V+ V SG +++W D +
Sbjct: 54 ARVNRDLQLLGIEENELVSILTVTGGTGPIKGLHKADEKIVTCVESGELQIWNDKSEILS 113
Query: 496 DIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVT 675
+ TG + MR ++ TGG +N LK W + Q T+SAKN+ D L L P+ +T
Sbjct: 114 EWKTGPGVAVMRGSTEKPEIVTGGMKNLLKTWNLETGQQTWSAKNVPPDMLGLEIPIMIT 173
Query: 676 DLVFVPGEGGRVLAVCSRHGYVRLYDTRSQRRPVQNVTF-DLAATCIAPSISTRLALVGF 852
D F+PG+ +L H +RLYD R+QRRPV+ + F + C + + T L
Sbjct: 174 DARFIPGQ-NTILEATKLH-EMRLYDPRAQRRPVKKIPFMENPIMCTSLTYKTNQILAAN 231
Query: 853 ARGQLRQVELR 885
+ G++ +LR
Sbjct: 232 SIGEMGLFDLR 242
>AC025716-6|AAK95889.1| 401|Caenorhabditis elegans Hypothetical
protein Y39G10AR.9 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.31
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = +1
Query: 415 GLGKVNNTLVSAVSSGTVRVWG--DDANEDI--FTGGKLDRMRVCSDDTLFATGGEENDL 582
G+ V +S + GTVR W + A + F GK M + DD+ FA E N L
Sbjct: 202 GIIGVGREFLSCSNDGTVRFWSCKNAAPTETWSFEKGKCIDMAMSVDDSRFAVICENNFL 261
Query: 583 KVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVLAVCSRHGYVRLYDTRS 762
S + D +QL P T L F EGG+ + V G+V Y+
Sbjct: 262 -------SAIDLHGDKIRRD-IQL--PSVPTALCFSGDEGGKAVFVGFEDGHVAAYNVSD 311
Query: 763 QRRPVQNVTFDLAATCI 813
+R + VT + TC+
Sbjct: 312 RRLIGEIVTKKGSVTCL 328
>Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical
protein T01C3.1 protein.
Length = 727
Score = 32.7 bits (71), Expect = 0.54
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = +1
Query: 409 VVGLGKVNNTLVSAVSSGTVRVWGD-----DANEDIFTGGKLDRMRVC---SDDTLFATG 564
VVG+ + + +VS T+R W D +F G + +C D +F TG
Sbjct: 99 VVGVPQKESQIVSISGDSTIRCWDLNQSTLDRKSQVFFGHEGSVRSICFAPDDPNVFVTG 158
Query: 565 GEENDLKVW 591
G + +K+W
Sbjct: 159 GRDFQVKIW 167
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 31.9 bits (69), Expect = 0.95
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = -3
Query: 719 TANTLPPSPGTNTRSVTQTGWRS*SQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVSS 540
T NT P +P T T + T S + + G SPT QT + P V ++ +
Sbjct: 496 TTNTPPANPTTATPTTVGTMTPSTGTTTVP-VPTTTG--SPTTQTTAPVTKPTVPSSTTQ 552
Query: 539 LQTLILS--SFPPVKISSFASSPHTLTVPLDTADTNVLFTFPRPTTCPS 399
+ + S PPV +S ++ T TVP+ T T V + PTT P+
Sbjct: 553 TAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTT--TVVPSSATVPTTPPT 599
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.95
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +1
Query: 262 QKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTL 441
+ +G+ C+++ + +I+ G ++ I+++ + C G V+ L N +
Sbjct: 220 ENSKGVYCLQY---DDDKIVSGLRDNTIKIWDR-KDYSCSRILSGHTGSVLCLQYDNRVI 275
Query: 442 VSAVSSGTVRVWGDDANEDIFT 507
+S S TVRVW + E I T
Sbjct: 276 ISGSSDATVRVWDVETGECIKT 297
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 0.95
Identities = 20/82 (24%), Positives = 39/82 (47%)
Frame = +1
Query: 262 QKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTL 441
+ +G+ C+++ + +I+ G ++ I+++ + C G V+ L N +
Sbjct: 220 ENSKGVYCLQY---DDDKIVSGLRDNTIKIWDR-KDYSCSRILSGHTGSVLCLQYDNRVI 275
Query: 442 VSAVSSGTVRVWGDDANEDIFT 507
+S S TVRVW + E I T
Sbjct: 276 ISGSSDATVRVWDVETGECIKT 297
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 31.5 bits (68), Expect = 1.3
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Frame = +1
Query: 241 LVDVKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGL 420
L D+ + + +T ++W +K + +G Q++ K ++ VG
Sbjct: 429 LCDLGQTNEQDQVTSVQWCDKGDL-LAVGTSRGVTQIWDVTTQKKTRELTGHSSR--VGC 485
Query: 421 GKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLD--RMRVCS-----DDTLFATGGEEND 579
N + + S + D +D G KL R VC D L A+GG +N
Sbjct: 486 LAWNADTICSGSRDRTIMHRDIRCDDNDMGRKLTNHRQEVCGLKWSPDKQLLASGGNDNQ 545
Query: 580 LKVWRVGESQP--TFSAKNLA 636
L VW + ++P T++ N A
Sbjct: 546 LLVWNLRRNEPIQTYTQHNAA 566
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 670 VTDLVFVPGEGGRVLAVCSRHGYVRLYDTRS 762
V DL + P E G +LA CS G ++L+DTRS
Sbjct: 278 VEDLAWSPTETG-LLASCSADGSIKLWDTRS 307
>Z96047-5|CAB09415.1| 379|Caenorhabditis elegans Hypothetical
protein DY3.6 protein.
Length = 379
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 659 WRS*SQSWAKFLAENVGWDSPTRQTFKSFSSPPVANNVSSLQTLILSSFPPVKISSFASS 480
WR+ ++W + N GW+ + + S P VSS TL+ SS P + S +S+
Sbjct: 8 WRAPGETWVRTPHTN-GWERTKLRPVQISSEPIFIPQVSSSPTLVSSSSPKFILDSGSSA 66
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -1
Query: 1210 PXGXXGXXGGXXPXGPXGWFXXSXPXSXLXGASV-GXRSMIPXFCXSEGSV 1061
P G G G P GP G S P A G + + P +C +G V
Sbjct: 243 PPGPPGPKGAPGPDGPPGVDGQSGPPGPPGPAGTPGEKGICPKYCALDGGV 293
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -1
Query: 1210 PXGXXGXXGGXXPXGPXGWFXXSXPXSXLXGASV-GXRSMIPXFCXSEGSV 1061
P G G G P GP G S P A G + + P +C +G V
Sbjct: 238 PPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEKGICPKYCALDGGV 288
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 5.0
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 602 SPTRQTFKSFSSPPVANNVSSLQTLILS--SFPPVKISSFASSPHTLTVPLDTADTNVLF 429
SPT QT + P V ++ + + + S PPV +S ++ T TVP+ T T V
Sbjct: 588 SPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTT--TVVPS 645
Query: 428 TFPRPTTCPS 399
+ PTT P+
Sbjct: 646 SATVPTTPPT 655
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -1
Query: 1210 PXGXXGXXGGXXPXGPXGWFXXSXPXSXLXGASV-GXRSMIPXFCXSEGSV 1061
P G G G P GP G S P A G + + P +C +G V
Sbjct: 238 PPGPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEKGICPKYCALDGGV 288
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +1
Query: 439 LVSAVSSGTVRVWGDDANED----IFTGGK--LDRMRVCSDDTLFATGGEENDLKVWRV 597
L + G+V+++ + NED +F+G K ++ + SD LFATGG++ + +W +
Sbjct: 75 LAIGYADGSVKLFNQE-NEDSEPIMFSGHKKAVNCIEFSSDGLLFATGGKDGVIVLWDI 132
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 709 VLAVCSRHGYVRLYDTRS 762
V+A C GYVR++DTRS
Sbjct: 223 VIATCGDDGYVRIWDTRS 240
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 569 SPPVANNVSSLQTLILSSFPPVKISSFASSPHTLTVPLDTADTNVLFTFPRPTT 408
+PPV + + T ++S P + ++SP T+ TA T+ T PTT
Sbjct: 228 TPPVTTSTMATTTANVTSAAPNTTVTISTSPTTVVTVPSTAQTSSTTTVTVPTT 281
>U23449-4|AAC24299.2| 534|Caenorhabditis elegans Hypothetical
protein K06A1.5 protein.
Length = 534
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 511 GKLDRMRVCSDDTLFATGGEENDLKVWRVGESQ 609
G++ + SDDT FAT G ++ +++WRV ++
Sbjct: 246 GEVHDVEWMSDDT-FATAGSDSKVQIWRVSPNK 277
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 550 LFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVLAVCSR 729
L TGGE+ KVW G Q F++ HD+ + W TD +L +C +
Sbjct: 200 LIVTGGEDLKFKVWD-GFGQILFNSS--VHDY-PITSISWNTDGTLFAVGSHNILRLCDK 255
Query: 730 HGY 738
G+
Sbjct: 256 SGW 258
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 550 LFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVLAVCSR 729
L TGGE+ KVW G Q F++ HD+ + W TD +L +C +
Sbjct: 200 LIVTGGEDLKFKVWD-GFGQILFNSS--VHDY-PITSISWNTDGTLFAVGSHNILRLCDK 255
Query: 730 HGY 738
G+
Sbjct: 256 SGW 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,962,752
Number of Sequences: 27780
Number of extensions: 482752
Number of successful extensions: 1579
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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