Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K09
         (1324 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    47   0.001
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    47   0.001
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.009
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.11 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.19 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.44 
UniRef50_UPI00015B4EB0 Cluster: PREDICTED: similar to targeting ...    35   4.1  
UniRef50_Q8IR22 Cluster: CG32580-PA; n=2; Eukaryota|Rep: CG32580...    35   5.4  
UniRef50_Q54MJ9 Cluster: SPX domain-containing protein; n=1; Dic...    35   5.4  
UniRef50_A3Z8F6 Cluster: Putative uncharacterized protein; n=2; ...    34   9.5  
UniRef50_Q7VA20 Cluster: Translation initiation factor IF-2; n=2...    34   9.5  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 47.2 bits (107), Expect = 0.001
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 743 CINESANARGEAVCVLGALPXPRSLTRCARSFGXGERYQL-TQRX*YGYPXNQGITQ 910
           CI + A AR EAV VL ALP  RS TRC RS G G      +    YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.8 bits (106), Expect = 0.001
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +2

Query: 767 RGEAVCVLGALPXPRSLTRCARSFGXGERYQLT 865
           R   +C  G +P PRSLTR ARSFG GERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.0 bits (99), Expect = 0.009
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +1

Query: 850 AVSAHSKXVIRLSTXSGDNAGXNM 921
           AVSAHSK VIRLST SGDNAG NM
Sbjct: 36  AVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 40.3 bits (90), Expect = 0.11
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 546 DPDMIRYXDEXGQTTTRMQ 602
           DPDMIRY DE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.19
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 795 APNTQTASPRALADSLMQ 742
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.44
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 741 SALMNRPTXGERRFAYW 791
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_UPI00015B4EB0 Cluster: PREDICTED: similar to targeting
           protein for Xklp2; TPX2; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to targeting protein for Xklp2; TPX2
           - Nasonia vitripennis
          Length = 826

 Score = 35.1 bits (77), Expect = 4.1
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 33  DSPLPTVF*ILLHIADRMSQ--IAEEQKLEESDGLPPASSSSIAAQEKPRXELPTRALRP 206
           DSPL     I L +    ++  I+ E+   ES+  P A+ S IA + K +    ++    
Sbjct: 254 DSPLYETSQINLEVTATSTEHEISHEKSEPESEPQPLANDSKIANKGKDKESSSSQQNSS 313

Query: 207 RSTLTRKTTNALSSQSVGSGGSAKRKTA 290
           +     +   A SSQ  G G  +K+K A
Sbjct: 314 KQLPKSRVVTAFSSQPTGPGSGSKKKVA 341


>UniRef50_Q8IR22 Cluster: CG32580-PA; n=2; Eukaryota|Rep: CG32580-PA -
            Drosophila melanogaster (Fruit fly)
          Length = 16223

 Score = 34.7 bits (76), Expect = 5.4
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +3

Query: 90   QIAEEQKLEESDGLPPASS---SSI---AAQEKPRXELPTRALRPRSTLTRKTTNALSSQ 251
            Q A+E+  E S  LP  ++   SS+   +A+E    E+P   L   S  + KT N  SSQ
Sbjct: 8691 QTAQEETSEHSKSLPQLTTEERSSLQESSAEENQMTEVPWTVLTSLSQSSSKTKNIFSSQ 8750

Query: 252  SVGSGGSAKRKTALNKNQIPKT 317
            SV    +++  T      +P++
Sbjct: 8751 SVNEDKTSQEDTRTLSISVPQS 8772


>UniRef50_Q54MJ9 Cluster: SPX domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: SPX domain-containing
           protein - Dictyostelium discoideum AX4
          Length = 919

 Score = 34.7 bits (76), Expect = 5.4
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 132 PPASSSSIAAQEKPRXELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKN 302
           PP+ SSS  +Q + + E+P +++ P +T T     + SS S  +  +   KT +N +
Sbjct: 67  PPSQSSSSPSQSQSQIEIPLQSIEPTTTTTTTAATSSSSSST-TTTNVNSKTIINSS 122


>UniRef50_A3Z8F6 Cluster: Putative uncharacterized protein; n=2;
           Synechococcus|Rep: Putative uncharacterized protein -
           Synechococcus sp. RS9917
          Length = 288

 Score = 33.9 bits (74), Expect = 9.5
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
 Frame = +3

Query: 66  LHIADRMSQIAEEQKLEESDGLPPASSSSIAAQEKPRXELPTRALRPRSTLTRKTTNALS 245
           L  A+R  Q+ E+Q       +  AS+  +AA    R E   + L+ R     +   A S
Sbjct: 106 LQEAERQKQVLEQQMELRERQMEEASAQKVAAVAAERDEAKQQILQLRKDSLLE--RAFS 163

Query: 246 SQSVGSGGSAKRKTA-LNKNQIPKT-NVHSGGDGCLLLERTTLSGIPLIQDD 395
                +GG A+     + K Q+     + SG DG  +LE     G PL+ DD
Sbjct: 164 EAEGRTGGDARGTFFDIFKGQLGACFRLSSGSDGKDVLEPLDSQGKPLLGDD 215


>UniRef50_Q7VA20 Cluster: Translation initiation factor IF-2; n=26;
           cellular organisms|Rep: Translation initiation factor
           IF-2 - Prochlorococcus marinus
          Length = 1134

 Score = 33.9 bits (74), Expect = 9.5
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 138 ASSSSIAAQEKPRXELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIP 311
           ++SSS  A++KP  E+ T      S  T+   NA ++ S+    S K K A  K +IP
Sbjct: 59  SNSSSPPAKQKPNKEILTLKKAITSPPTKSEANAKTNASLDKTSSLKNKPASPKKEIP 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,803,876
Number of Sequences: 1657284
Number of extensions: 16042664
Number of successful extensions: 34687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34495
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 136463687783
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)