Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K09
         (1324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    29   1.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   5.8  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 8   IDSYREFLRFPAPNSILNTIAYCRQDVTNSRRTETRRIGWIASCF 142
           ++  RE+LR P+   +   ++  R  V+N++  +   I  + SCF
Sbjct: 177 LEGVREYLRSPSTGILSKGVSSTRSPVSNTKLLKAEFIKQVISCF 221


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 117 ESDGLPPASSSSIAAQEKPRXELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 296
           ES   PP SSSS   +   +  LP R L        +  ++LS Q  GS  S  R+++ +
Sbjct: 417 ESPPPPPISSSSTTPRPDDKPSLPPRGL-------SEDNDSLSLQKTGS--SDTRRSSFS 467

Query: 297 KNQIPKTNV 323
             +IP +++
Sbjct: 468 TLKIPDSDI 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,820,353
Number of Sequences: 5004
Number of extensions: 59922
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)