Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K07
         (1263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    62   1e-10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.3  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 32/88 (36%), Positives = 50/88 (56%)
 Frame = +3

Query: 195 PIVLWHGMGXTCCMSFSLGSFKIFLXKXIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVE 374
           P+V+WHG+G T   SF+L      + K   G  V ++++G+N  ED + GY      Q++
Sbjct: 27  PVVIWHGLGDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLD 84

Query: 375 YVCEKLAADPKLSNGFNVMGFSQGCQFM 458
            VC+ +  +  LSNGF  +G SQG  F+
Sbjct: 85  EVCDLIGNEDSLSNGFYALGLSQGGLFL 112


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect(2) = 0.30
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 687 PFXXGXPPPXXXFFFXGAPXPPPXGXPPPP 598
           P   G PPP       GA  PPP   PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783



 Score = 21.0 bits (42), Expect(2) = 0.30
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 822 PPPPPP 805
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 880 PXXXXPXPXGGGXFXXXXXPPPPPPXPXKKXK 785
           P    P P   G       PPPPPP   KK K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 3.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 858 PXGGGXFXXXXXPPPPPP 805
           P G G       PPPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 3.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 819 PPPPPP 802
           PPPPPP
Sbjct: 361 PPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,019
Number of Sequences: 5004
Number of extensions: 48251
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)