Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K04
         (1313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    43   1e-04
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   1.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   5.7  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   5.7  

>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +2

Query: 311 NSGRTLPNVLVTGTPGVGKXTLCRNLXDRTKFGWRDVSNMXQEXN*LDEYDXEYXXRFLN 490
           N  R LPN+++ GTPG GK TL   + + T+     + ++ +E +    +D ++    ++
Sbjct: 3   NEERELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVD 62

Query: 491 EDKVVXXRKXX*SSXNCI 544
           EDKV+   +       CI
Sbjct: 63  EDKVLDYLEPKLLKGGCI 80


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 176 PTHLPNNYRQSTNKCNLNIPXXHKS 102
           P HL    R  TNKCNL +P    S
Sbjct: 354 PIHLRGALRDVTNKCNLKVPRNRNS 378


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 302 IKMNSGRTLPNVLVTGTPGVGKXTLCRNLXDR 397
           I++ S RT  N ++ G PGVGK ++   L  R
Sbjct: 194 IRVLSRRTKNNPVLIGEPGVGKTSIAEGLARR 225


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 284 SFTKYQIKMNSGRTLPNVLVTGTPGVGKXTLCRNLXD 394
           SF +  +  N+G  L    V+G PG GK  L  N+ D
Sbjct: 181 SFFRQHLDANAGGAL---YVSGAPGTGKTVLLHNVLD 214


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 426 FDTSLQPNLVRSXKFLHNVHLPTPGV 349
           F  SL P L R  +F  ++H+P P V
Sbjct: 415 FPESLDPALTRPGRFDRHIHVPLPDV 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,421
Number of Sequences: 5004
Number of extensions: 30573
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)