Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K04
         (1313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0057 + 12872946-12873152,12873371-12873421,12876335-128764...    52   1e-06
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56...    30   3.5  

>07_03_0057 +
           12872946-12873152,12873371-12873421,12876335-12876480,
           12876567-12876756
          Length = 197

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 33/59 (55%)
 Frame = +2

Query: 320 RTLPNVLVTGTPGVGKXTLCRNLXDRTKFGWRDVSNMXQEXN*LDEYDXEYXXRFLNED 496
           RT PNVLVTGTPG GK T C  L D       ++ ++ +E +  D +D E     +NED
Sbjct: 10  RTRPNVLVTGTPGTGKTTTCSLLADAVDLRHINIGDLVREKSLHDGWDEELECHIINED 68


>06_01_0067 +
           561910-561987,562698-562759,564293-564338,564701-564758,
           564892-565009,565130-565286,565611-565718,565884-565955,
           566058-566174,566309-566404
          Length = 303

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 317 GRTLPNVLVTGTPGVGKXTLCRNLXDRTKFGWRDVSNMXQEXN*LDEYDXEYXXRFLNED 496
           G+ +  V V G PG GK T C  +  +  F      ++ +E    D          +NE 
Sbjct: 72  GKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEG 131

Query: 497 KVV 505
           K+V
Sbjct: 132 KLV 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,891
Number of Sequences: 37544
Number of extensions: 167141
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)