Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K04
         (1313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical pr...    52   7e-07
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    29   7.3  
U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    29   7.3  

>Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical
           protein E02H1.6 protein.
          Length = 182

 Score = 52.4 bits (120), Expect = 7e-07
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +2

Query: 320 RTLPNVLVTGTPGVGKXTLCRNLXDRTKFGWRDVSNMXQEXN*LDEYDXEYXXRFLNEDK 499
           R  PN+LVTG+PG GK TL + + ++  F + +VS   +E N   ++D +Y    L+EDK
Sbjct: 7   RRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVRENNLQGDFDEQYNCHVLDEDK 66

Query: 500 VV 505
           ++
Sbjct: 67  LL 68


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 335 VLVTGTPGVGKXTLCRNLXDRTKFGWRD 418
           +L+TG PG GK +LC+ L         D
Sbjct: 175 ILLTGPPGTGKTSLCKGLAQHLSIRMND 202


>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 335 VLVTGTPGVGKXTLCRNLXD 394
           VLV G PG GK T C  L D
Sbjct: 4   VLVIGAPGAGKSTFCAGLTD 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,566
Number of Sequences: 27780
Number of extensions: 166360
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)