Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K03
         (1279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    30   4.5  
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    29   7.9  

>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 385 QETLRMTSFR-DKSALFGGRVKEGDPPTWP 471
           +E L+M   R DKSA FGGR    DP TWP
Sbjct: 255 KEGLKMKLPRYDKSA-FGGRGDRADPSTWP 283


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 405 RHPQGFLVIQKFAYEEPCHRNTKPNEARSDAED 307
           RH +  +VI +F YE+   R    +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,389,239
Number of Sequences: 37544
Number of extensions: 465128
Number of successful extensions: 840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)