Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_K03
         (1279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   7.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   10.0 

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 45  CSV-TIDFSSFVILNKYLG*YIPVSIQLIKYCLSAFASIISNRFMALSQFLRRNLVSIVF 221
           CS  T+   S V L+K     IPV + ++   LSA A ++     +L++F +R       
Sbjct: 159 CSTATVYVMSVVGLSKAPA-QIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQRRAFLETR 217

Query: 222 PTISITLI 245
            ++ + L+
Sbjct: 218 QSLEVQLV 225


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 111 VSIQLIKYCLSAFASIISNRFMALSQFLR 197
           V  ++ +YCL      ++N+F +LS+ LR
Sbjct: 597 VGKKMPRYCLFGHNVTLANKFESLSEPLR 625


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 36  PHYCSVTIDFSSFVILNKYLG 98
           P Y  +TID  SF + N   G
Sbjct: 233 PRYAKMTIDGESFTLKNGICG 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,286
Number of Sequences: 438
Number of extensions: 5368
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)