Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J24
         (1273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical pr...    47   3e-05
U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulat...    29   5.3  

>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 33/94 (35%), Positives = 49/94 (52%)
 Frame = +3

Query: 159 KAVNLKAXKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTEVLCDRSEPTVE 338
           +A+NL+  K I I  DP   +    R F H I APK+ +TNPN  VKT++  DR  P   
Sbjct: 25  RALNLQKVKSIDISLDPLHHDNLSIRTFWHSIMAPKVRLTNPNVRVKTDIRNDRRAPFFV 84

Query: 339 ITLLPAIAATAKIQKVTLRSENLTCLEILQLLNK 440
            TL          QK+   +EN+T ++++   N+
Sbjct: 85  ATLDDG-------QKLHFSTENMTAMDVIMNFNR 111


>Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical
           protein ZK512.11 protein.
          Length = 110

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 40/73 (54%)
 Frame = +2

Query: 524 KAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRFITIKPV 703
           K +  K +  LDV+ ++ + +P F ++F E+TFYVF    VL  ++   V+++   +K  
Sbjct: 16  KRKNGKTRLMLDVVHQMNQAVPTFNELFDEETFYVFAFLVVLVAVIFVIVMAKCFNVKIK 75

Query: 704 E*IVTFKLKYNDL 742
           E  +    ++ D+
Sbjct: 76  EYDIDIDREWRDM 88


>U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulated
           protein 191 protein.
          Length = 97

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 550 SFRFCHLCFYFVFVFFLS 497
           SF FC+ CF  +FVFF S
Sbjct: 51  SFFFCYFCFVILFVFFSS 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,130
Number of Sequences: 27780
Number of extensions: 331990
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)