Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J23
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...   111   3e-25
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    77   7e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    48   3e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    30   0.57 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.76 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    28   2.3  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   4.0  

>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score =  111 bits (266), Expect = 3e-25
 Identities = 50/68 (73%), Positives = 55/68 (80%)
 Frame = +1

Query: 148 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 327
           +NPKPFL  L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG  TG+LGE+LI
Sbjct: 6   VNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILI 65

Query: 328 RCNNVLYV 351
           RCNNVL+V
Sbjct: 66  RCNNVLWV 73


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 76.6 bits (180), Expect = 7e-15
 Identities = 37/71 (52%), Positives = 45/71 (63%)
 Frame = +1

Query: 151 NPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIR 330
           +P  FLN + GK VL++L  G +YKG+L   DGYMNL L  TEE V+G  T   G+  IR
Sbjct: 4   SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63

Query: 331 CNNVLYVRGAD 363
            NNVLYV   D
Sbjct: 64  GNNVLYVSALD 74


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 154 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 330
           P   LN+  G+ +LV+LK G  + G L + D YMNL L      + DG     L E  IR
Sbjct: 3   PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62

Query: 331 CNNVLYVRGAD 363
            NN+ Y+R  D
Sbjct: 63  GNNIKYLRIQD 73


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 172 SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 282
           SL   S+ V  K G  + G L++ DG+MNL L++ +E
Sbjct: 8   SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = -1

Query: 1085 PXPPXGXXPXPHRXPGXXXXXXGTEXXXXPTPFPGXWPIXXAENLPPSPXP 933
            P P  G  P P    G       +E    P P  G  P+      PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +2

Query: 440 ITGKREILSKKIEISYYSVSSKITLGIYPEILMIEEKNVNWNYCCIQCLNETTLILFFFL 619
           I GK +IL        Y+VS+KI      ++L+  + N+N +  C + L++ + I  FF 
Sbjct: 102 IPGKDKILMCPPSYGMYTVSAKINDVEVVKVLLEPDFNLNVDAIC-ETLSKDSAIKVFFA 160

Query: 620 ITMSETTSSA 649
            +    T+ A
Sbjct: 161 CSPGNPTAKA 170


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 190 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 288
           V VKL+   E  G L + D ++N+ L + EE+V
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,891
Number of Sequences: 5004
Number of extensions: 58732
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)