Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J22
         (1277 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    31   1.5  
08_01_0534 - 4635122-4635380,4635716-4635837                           31   1.9  
12_01_1029 + 10547341-10548108                                         30   3.4  
11_01_0260 - 1985258-1985794,1986874-1986990                           29   5.9  
03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256     29   5.9  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 143 PPAVAPGPRDPSHMLGRSRCTAGTPGTVPLRDREW 39
           P AVAP P  P  + G  +  AG  G +PL   EW
Sbjct: 78  PAAVAPPPPQPKRLQGGRKKGAGGHGKLPLPWEEW 112


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 108 AGVAWARCDGRRRPATSLGLWTGRATDVTR 197
           +GV W  C GR    +++G WTG A + TR
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>12_01_1029 + 10547341-10548108
          Length = 255

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -2

Query: 223 RLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVAPR 77
           R + R   RR     RPV       GR  P+ R     A C G R  PR
Sbjct: 40  RTTSRLRCRRWWRCGRPVHGRGGTGGRTTPARRMERFAAMCGGFRAKPR 88


>11_01_0260 - 1985258-1985794,1986874-1986990
          Length = 217

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 54  QRDCARGT-RGATRPPQHVAGVAWARCDGRRRPAT 155
           +R   RG  RG+ +PP HV G   + C GR  PAT
Sbjct: 163 ERGRGRGRCRGSLQPPVHVVGQQQSSC-GRHAPAT 196


>03_05_0470 - 24647118-24647267,24647387-24647528,24649070-24650256
          Length = 492

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 175 PVQRPSDVAGRRRPSHRAHATPATCWGGRVAPRVPLAQS 59
           P   P  +     P  R ++   T  GG  APR PLA+S
Sbjct: 6   PASPPPPIQASSLPPFRTNSLSPTVRGGNAAPRRPLARS 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,964,734
Number of Sequences: 37544
Number of extensions: 420451
Number of successful extensions: 1200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)