Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_J20
         (1315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.022
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.62 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +3

Query: 396 GGGGGXFXXXKKXPPPGXXGVXXXGXXXXXXQKKPXXGIFGGG-XGFXPXXGGXXXXP 566
           GGG G F      PPPG  G    G            G FGGG  GF    GG    P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244



 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +1

Query: 376 FYFXXXGGGGGGXFXXXKKXPPXGXXGF-XXGXXXXXPXKKNRXXEYLGGGXXFXXXXGG 552
           F+     GGG G F      PP G  GF   G              + GG   F    GG
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239

Query: 553 XG 558
            G
Sbjct: 240 FG 241


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 468 PXXEPPXPXGGGFFXXXKXXPPPPPXXXKIKK 373
           P   PP P   GF    +  PPPPP   K +K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 467 PXXNPXXPXGGXFFXXXKXPPPPPP 393
           P  NP  P     F     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.154    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,547
Number of Sequences: 5004
Number of extensions: 34908
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)